Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_019442.1 Length=60523 Score E Sequences producing significant alignments: (Bits) Value seq2692 134 5e-27 seq2629 107 7e-19 seq2565 82.4 3e-11 >seq2692 Length=686 Score = 134 bits (148), Expect = 5e-27 Identities = 258/378 (68%), Gaps = 2/378 (1%) Strand=Plus/Minus Query 29099 ATCCTCGACCAGTTTCTGGATGAAAAGGAAGGCAACCACACCACGGCATACCGTGATGGT 29158 || |||| |||||| |||||||||| || ||||||| |||| || || |||| Sbjct 637 ATTCTCGCTCAGTTTTTGGATGAAAAAGAGGGCAACCGATTATCGGCGTATCGGGATGCA 578 Query 29159 GCGGGTATCTGGACCATCTGCCGTGGAGCCACCCGGGTGGATGGTAAGCCTGTTATTCCT 29218 || || |||||||| |||||||| || | ||||| | |||||| || ||| || Sbjct 577 GCTGGCATCTGGACAATCTGCCGGGGCGTAACCCGAATTGATGGTGCTCCCGTTCGTCAG 518 Query 29219 GGCATGAAGCTGTCGAAGGGGAAATGCGACCAGGTTAACGCCATTGAGCGTGATAAGGCG 29278 || ||| | ||| | | ||||| | | ||||||| || ||| |||| Sbjct 517 GGTATGCAACTGACACCGAACCAATGCCGTGATCTCAACGCCAAAGAAGCAGATCAGGCC 458 Query 29279 CTGGCATGGGTGGAGAAAA-ACATCAAAGTGCCACTGACTGAACCCCAGAAAGCGGGTAT 29337 | |||||||| |||| | || || ||||||||||||||||| |||| ||| || || Sbjct 457 GTTGCATGGGTC-AGAAGCCATATTAACGTGCCACTGACTGAACCACAGATAGCCGGCAT 399 Query 29338 TGCGTCATTCTGTCCTTACAACATTGGCCCAGGTAAGTGTTTCCCGTCGACGTTTTATAA 29397 ||| ||||| || |||||||| ||||| |||| || ||| | || ||||| || Sbjct 398 TGCCAGTTTCTGCCCATACAACATCGGCCCCGGTAGATGCTTCTCTTCCACGTTCTACCG 339 Query 29398 ACGAATTAATGCAGGAGATCGAAAAGGTGCCTGCGAAGCGATTCGCTGGTGGATTAAGGA 29457 | | | ||||| || ||| | |||| || || | | ||| | ||||| || Sbjct 338 AAAACTGAATGCGGGTGATAGGCAAGGGGCTTGTCAGGAAATTAAACGCTGGATATTTGA 279 Query 29458 CGGTGGCAGAGACTGCCG 29475 ||| |||||||| ||||| Sbjct 278 CGGCGGCAGAGATTGCCG 261 >seq2629 Length=15125 Score = 107 bits (118), Expect = 7e-19 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 22616 GACAAGCTGAAAGCGCGCAGGAGGGACTTACAGCCCCGCAGTTACTGGATTAAGCAGGCA 22675 || || || ||||| |||| | | || | ||||||||||| |||||||| || ||| Sbjct 152 GATAAACTCAAAGCCCGCAAGTTAGCAGTAAAACCCCGCAGTTATTGGATTAAACAAGCA 93 Query 22676 CAACAGGCTGTGAATGCTTATATCAGGGAGCGGGACCGTCATTTGCCGTGTGTTTCATGC 22735 ||||| || || || || |||||||| || | |||||| ||||||| || | |||||| Sbjct 92 CAACAAGCCGTCAACGCATATATCAGAGAAAGAGACCGTGATTTGCCATGCATATCATGC 33 Query 22736 GGGACGTTCGATTCAGCCCAGTGGGATGCAGG 22767 || ||||| | || || ||||||||||| || Sbjct 32 GGAACGTTTCAATCTGCTCAGTGGGATGCTGG 1 >seq2565 Length=10326 Score = 82.4 bits (90), Expect = 3e-11 Identities = 92/117 (79%), Gaps = 7/117 (6%) Strand=Plus/Plus Query 14705 CTGCCAGTGTTGCCCGTTCTCACGCCGTT-CTCGCTCTCGCGCGGGGATACTC-TCTCAT 14762 ||||||||||| ||||||| | | ||||| ||| |||||| |||| | || || || ||| Sbjct 4816 CTGCCAGTGTTCCCCGTTCGCGC-CCGTTACTCACTCTCGTGCGGAGCTAATCATCCCAT 4874 Query 14763 CGACCGGATCGCACCCGATGATACA--GCA--CGTTTACGTGTAGGGGTCTAAACAG 14815 |||||||||||| |||||| |||| ||| || | | ||||||||||||||| Sbjct 4875 CGACCGGATCGCGTCCGATGGTACATCGCAGTACTTCATGCATAGGGGTCTAAACAG 4931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193545417296480