Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1889 250 5e-61 seq4 201 2e-46 >seq1889 Length=309471 Score = 250 bits (276), Expect = 5e-61 Identities = 658/979 (67%), Gaps = 44/979 (4%) Strand=Plus/Plus Query 212696 GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATC 212755 |||||||||||| |||||||||| | | | | | ||| || ||||| || ||||| || Sbjct 13790 GTTCAGGGACTGCGACTGGTCTATGTAGGCGCCGCGGTCGGCCGCCATCTCCATGATGTC 13849 Query 212756 TCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAA-GCCGG 212814 |||| |||| |||||| || |||||| | | |||| || |||| |||||| | ||| Sbjct 13850 CTTCTGAGAGATCTCCCAGACCGTCTTGTACAAGTCTTGCAGATCCT-TGGGAATGTCGG 13908 Query 212815 GGATGTTCTGCACAGACCC--CCTGTGT-ATGGTCAGCTGCAGGCGCATGTCCTCGTTCC 212871 |||| ||| | || || ||| | ||| || | | | | |||| || || Sbjct 13909 CGATGCCCTGGATGGATCCACCCTTCGCGATGATCTCGTTCTTGAGTTTGTCGTC---CC 13965 Query 212872 AGAGGCCCCTGGTCT-CCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCT 212930 | ||| | | || ||| | ||||| || |||||||||||| ||||||||||| || Sbjct 13966 ACAGGTTCA-GCTCAACCAAGTCCTTGAGCAAGTGAGGGTTGACGATCTGGAAGTCGCCG 14024 Query 212931 GAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCC 212990 || || || | | ||| | ||| || ||||| |||||||| ||||||||| || Sbjct 14025 GAAAGGACACGACGGCTGTAGATGTTGGAGGTGTACGGCTCGATCGACTCGTTGTTTCCG 14084 Query 212991 AGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCG 213050 || || || |||||| || |||||||| ||||| ||||| || ||||| | |||||| Sbjct 14085 AGGATTTGAGCAGTGGACGCCGTGGGCATCGGAGCAACCAGAAGGCTGTTGCGGACTCCG 14144 Query 213051 TGCTCGCCGA--TGAGGCGCCGAAGCTCTGCCCAGTCCCA----TC--TGCCAGACAGGT 213102 |||| | ||| | | | ||| |||||||| || || || | || | Sbjct 14145 TGCTTGGCGATCTTCTCCTTCAAAG--TAGCCCAGTCGCACTGGTCCGTGGGAACCACGG 14202 Query 213103 CCT---CGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGC 213159 || |||||| | ||||||| || | || | | ||| ||| || || || Sbjct 14203 GCTTGCCGTCCTCGGTGGTCCACATCTCGTATTGGAGCACGCCGCGGCTGACCGGAGAGC 14262 Query 213160 CCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAG 213219 | | ||| | ||||| || | | || |||||||||||||| | || |||| | Sbjct 14263 CTTCGTAGGTTTCATAGGGTCCGTACAGCTCCGCCAGCTCGCAGGAAGACTCGAGGGAGG 14322 Query 213220 CGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGG 213279 ||| |||||||||||| || || | |||| | | ||| || || ||||||| Sbjct 14323 CGTGGTAGATGGTTTCGAAGATTCGCTTGTTCATGTCGCGGGCTTCAGGACTGGTGAAGG 14382 Query 213280 GCA---TCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTC 213336 | | ||||| || | || | || || || |||||||| ||||| || ||||| | Sbjct 14383 GGAAGCGCATCA-GCAT--AAAGGCGTCCGCGAGTCCCTGGACTCCGATTCCAATGGGAC 14439 Query 213337 TGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCT 213396 ||| | | ||| || | | || | || ||| |||||| ||||||||||| Sbjct 14440 GGTGCCGCTTGTTGGAGGTTTCGGCTTCAGGAACAGGATAATAGTTGCCGTCGATGATCT 14499 Query 213397 TGTTGAGGTTGCGGGTGGCCACTTTGGTGA---CATGGGCCAGGTACTCGTGATTGAACA 213453 ||||||||||||| ||| | || || |||| | ||| || | ||||| | ||| Sbjct 14500 TGTTGAGGTTGCGAGTGACGACCTTAGTGATCGCGTGG---AGCTTCTCGTAGTCGAAGG 14556 Query 213454 CGTAGCCCCCGTCCTGCACAAACTCAG-GCAGGGCGATGCTGGCCAGGTTGCAAACGGCC 213512 | | || |||| || || || | || || || || | |||||| ||||| Sbjct 14557 TCTTGTCC---TCCTTGACGAA-TCGGTTCAACGCAATCGAAGCTAAGTTGCACACGGCG 14612 Query 213513 ACCTCCT-GAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGT 213571 || || | | ||| | | ||||| | |||||| |||||||||||| ||| ||| || Sbjct 14613 ACTTCGTCGGGAGAC-GAGTACTGGACGATCTCAGTGCACAGGTTGGAGCACTTGATCGT 14671 Query 213572 GCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGG 213630 ||||||||||| ||||| ||| ||||| | ||| | ||||||||||||||||| || | Sbjct 14672 TCCCAGGTTCTGCTGGTTCGAC-TTGCGGTTGCAGGCGTCCTTGTAGAGCATGTAAGGAG 14730 Query 213631 ACCCGGTCTCTAGCTGGGA 213649 || || || | |||||| Sbjct 14731 TTCCAGTTTCGATCTGGGA 14749 Score = 89.7 bits (98), Expect = 1e-12 Identities = 278/422 (66%), Gaps = 14/422 (3%) Strand=Plus/Plus Query 213994 TGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATAT 214053 ||||| | | || || | ||| | ||| |||||||| |||||||||||||| || Sbjct 15184 TGTTGTACACTCGGAGCATGGGGATCAGGCCGTTGGAGGTGCCGTTGGTTCCCGCAATCA 15243 Query 214054 ACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGA 214113 | || ||||| | | | | | | ||| || ||||| ||||| ||||||||| Sbjct 15244 TGGTTCCCGAGGCGCGAATGCAGTGCGCGTTGAGTCCGATGCCTCCGGCCGACTTGGAGA 15303 Query 214114 TCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTG-AGGTTC 214172 ||| |||||| ||| | |||| | ||||||| | ||| |||||| ||| | | Sbjct 15304 TCAAGGCGCACTGCCAGAGGGTCTTGAAGATGCCGTCGATGGAGTCATC-GTGCATTGTG 15362 Query 214173 AGCAAGAAGCAG---CTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGG 214229 || | ||||||| ||| | ||||||| || | | || | |||||| || ||||| Sbjct 15363 AGAAGGAAGCAGGAACTC---ATCTGGGGCTTGCAGGTTCCGGCGTTGAAGAGGGTGGGC 15419 Query 214230 CTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATG 214289 || ||| | | | | || | ||| ||||||| || | | | | | |||| Sbjct 15420 GATGCGTGGGTGAACCAGCGATCCGACATGAGGTTGTAGGTTTCGATGGCAGCGTCGATG 15479 Query 214290 TCGTGCTTGTGGA-TCTGTAGAGCGCACCTCATCAGCATGTGCTGGGGCCTCTCTATGGG 214348 || | |||||||| || | | || | ||| |||||||| ||||| | ||| | | Sbjct 15480 TCCTCCTTGTGGACTCCCACGGCCACA-CGCATAAGCATGTGTTGGGGACGCTC--AGTG 15536 Query 214349 TCCTT--TGGGGCCCTTGAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAGGAG 214406 |||| | | ||| |||| ||| || || ||||| || || ||||| || |||| | Sbjct 15537 ACCTTGCCGTTGATCTTCAGCAAGTACGACCGTTCCAGGGTTTTAAACCCGAAATAGGTG 15596 Query 214407 TA 214408 || Sbjct 15597 TA 15598 >seq4 Length=195412 Score = 201 bits (222), Expect = 2e-46 Identities = 408/605 (67%), Gaps = 3/605 (0%) Strand=Plus/Minus Query 47954 AGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATG 48013 ||||| || || |||||| |||| || || || |||||| |||||| || || Sbjct 71552 AGCAGATGGTCAGCGACGAACTCAATATAAAGTGCCATGAGATCCCGGTTCATCCCGATC 71493 Query 48014 AGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACA 48073 | | ||| || | ||| | || || |||||| ||| |||| ||| ||||| | | | Sbjct 71492 ATGTCCACTGGAAGAGCTTCGGTAAGGTACTCCTGCTCGATCTTCACAGCTTCATCGATA 71433 Query 48074 ATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAG 48133 || | ||| || | | || || || | ||||| |||| || | | |||| Sbjct 71432 ATTTCCTTGACCTGCTTCGGGGAAGGCTTCTCCTCCAGGTACTTG---TACATGAGGCAG 71376 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 |||||||| | ||| | |||||| || ||| || || ||||| | ||| ||| Sbjct 71375 GCAAAGTCACGGTGAAGGCCTTCATCGCGGGAAATCAGTTCGTTGCTGTGAGTGAGTCCA 71316 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||||| || | || |||||||| || || || ||||| || |||||||||||||| Sbjct 71315 GGCATGAGGCCTCGCTTCTTGAGCCAAAAGATGGCAGCGAACGACCCAGAGAAGAAGATT 71256 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313 || || || || ||||||||| | | | ||| || |||||||||||||| |||| Sbjct 71255 CCTTCAACGGCGGCGAACGCGATAACGCGAGTTCCAAATGAAGCGTTCTTGTCGCCGATC 71196 Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAG 48373 ||| || |||||||| ||||||||||||||||| || | | | ||||| ||| Sbjct 71195 CAGCGCAGAGCCCAGTCCGCCTTCTTCTTGATGCAAGGGAACTCGTGGATGGCGTTGAAA 71136 Query 48374 AGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCA 48433 || |||| ||| || || | || || | | || ||| | ||||||||| Sbjct 71135 AGAACGTTGCGCTCCTTTGGATCGACGACGTAAGCTTCAATCATCTTGGAGTACATCTCC 71076 Query 48434 GAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGC 48493 ||||| | || | || |||||||| | |||||||| | ||| || || || Sbjct 71075 GAGTGGATGCCTTCGACGGCCATCTGGAAGCTGTAGAAGGACAAGGCTTCTGGCATCTTG 71016 Query 48494 ACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAG 48553 || || || ||| | ||| | || || |||||||| || ||||| || || |||||| Sbjct 71015 ACCTCCTGGGTGAAACGCTCGACGAGGTTTTCATTGACGATTCCATCGGAGGCGGCAAAG 70956 Query 48554 AAGGC 48558 || || Sbjct 70955 AAAGC 70951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931499451125760