Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1889 197 3e-45 >seq1889 Length=309471 Score = 197 bits (218), Expect = 3e-45 Identities = 567/872 (65%), Gaps = 65/872 (7%) Strand=Plus/Plus Query 221357 ACCGGACTCCCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCA---AGAC 221413 |||||| || ||||| | || ||||| |||||||| || ||| | |||| |||| Sbjct 14253 ACCGGAGAGCCTTCGTAGGTTTCATAGGGTCCGTACAGCTCCGCCAGCTCGCAGGAAGAC 14312 Query 221414 TGCGTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGA-GTCTCTTGGCCTC 221472 | || |||| |||||||||||||| || ||||| |||||| | ||| | ||| || Sbjct 14313 T-CG--AGGGAGGCGTGGTAGATGGTTTCGAAGATTCGCTTGTTCATGTCGC-GGGCTTC 14368 Query 221473 GGGAGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGAT 221532 ||| |||||||| | |||| || | |||| |||| || |||||||| |||||||| Sbjct 14369 AGGACTGGTGAAGGGGAAGCGCATCAGCATAAAGGCGTCCGCGAGTCCCTGGACTCCGAT 14428 Query 221533 ACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGAC 221592 || ||||| | ||| | | ||||||| | | ||||| || || |||||| ||||| | Sbjct 14429 TCCAATGGGACGGTGCCGCTTGTTGGAGGTTTCGGCTTCAGGAACAGGATAATAGTTGCC 14488 Query 221593 GTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTG 221652 |||||| | ||||||||||| |||||| ||| ||| | | || ||||||| || Sbjct 14489 GTCGATGATCTTGTTGAGGTTGCGAGTGACGACCTTAGTGATCGCGTGGAGCTTCTCGTA 14548 Query 221653 ATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCT 221712 | ||| | | || || | | | ||||| || || || || Sbjct 14549 GTCGAAGGTC--TTGTCCTCCTTGACGAATCGGTTCAACGCAATCG--------AA---- 14594 Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 || | ||| |||||||| || ||||| | ||||| | |||||| || || || Sbjct 14595 -GCTAAGTTGCACACGGCGACTTCGTCGGGAGACGAGTACTGGACGATCTCAGTGCACAG 14653 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTT 221832 |||| ||||||||| || ||||||| | || || |||||||| ||| |||||||| Sbjct 14654 GTTGGAGCACTTGATCGTTCCCAGGTTCTGCTGGTTCGACTTGCGGTTGCAGGCGTCCTT 14713 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892 ||||||||| | ||| ||||| || | ||| | | |||| ||||||||| | Sbjct 14714 GTAGAGCATGTAAGGAGTTCCAGTTTCGATCTGGGAGGTGACGATCTCTTCCCAGAGTGC 14773 Query 221893 TCTGGCGCTCACCGTCCTCTTGA----------CTGCAC---CCT---------CG---- 221926 | ||| | || | |||| | |||| | ||| || Sbjct 14774 ACGGGCCTTGACACGCTTCTTAAAACGTCCTTCCTGCTCGTACCTTAAATAAGCCGATAA 14833 Query 221927 GTCT----------------TTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTA 221970 ||| | | ||| ||| |||||| | || |||| || ||||| Sbjct 14834 TTCTAGAAGCCATGAAAGAAATACTTACTGGGTGTAGAGCTTCTCGAACTCTTTGCCGTA 14893 Query 221971 CGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTT 222030 | || || || |||||| | || ||||||| | ||| | |||| || || Sbjct 14894 AGTGTCAGGGAGTCCGGGACACTTATGAGGGCACATCAAAGACCACTCTTTGTCCTCCTT 14953 Query 222031 GACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTG 222090 ||| | | |||||||||||| ||||||||||| | | ||||| || | || |||| Sbjct 14954 GACACGTTCCATGAAGAGGTCAGGGATCCACAGGCCGTAGAAGAGGTCGCGGGCGCGCTC 15013 Query 222091 CTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGG 222150 || || || ||||| | | || || ||||| |||||||| |||||||| || Sbjct 15014 TTCTTCGGATCCAGTGTTTCGCTTGAGGCGCAGGAACTCGAAAATGTCGGCGTGCCATGG 15073 Query 222151 CTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 ||| | |||| ||| | || ||||| |||| Sbjct 15074 CTCGACGTAGATGGCAAACGCTCCGGGGCGCT 15105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928811547356160