Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_019501.1 Length=39646 Score E Sequences producing significant alignments: (Bits) Value seq2629 206 7e-49 seq1458 167 6e-37 seq2599 104 6e-18 >seq2629 Length=15125 Score = 206 bits (228), Expect = 7e-49 Identities = 560/847 (66%), Gaps = 19/847 (2%) Strand=Plus/Minus Query 7827 TTATGGAAGGTTTGCTAGTTTTGCATCGACAACTACGCCGATGATTTTGCAGTTTCCGTT 7886 |||||| || || || | | ||||| || || ||||| || ||||| ||||| || || Sbjct 7439 TTATGGGAGTTTCTTTATTCTGGCATCTACTACAACGCCTATTATTTTACAGTTCCCATT 7380 Query 7887 GATCTCGATCATCGGATATTGTGGGTTAAGTGGTTTTAGAAACTTCCTGCCTGCATCAAT 7946 || ||||| | || || || || || ||||||||| | || || ||||| | Sbjct 7379 AATGGGTATCATGCGGTACTGAGGATTCAGAGGTTTTAGATATTTTGAACCAGCATCTGT 7320 Query 7947 AACTAACTTCTTGAAAGTTGCCTCGTTTTCTCCTTCGAGCTTTGCAACTACCAGTTTCCC 8006 | | | || || || || || || ||| || || || || || | || || Sbjct 7319 TATGTATTGTTTAAATGTGGCTTCATTATCT------AGTTTGGCCACAACTAACTTACC 7266 Query 8007 GTTACGCGGCTCTACTTCAGGATCGACGAGTATTATCATTCCTTCAGGGATACTGAGACC 8066 ||| ||||||| | || || || | ||| | ||| ||||| || ||||| || || Sbjct 7265 ATTAACTGGCTCTATATTTGGGTCAACTAATATAACCATCCCTTCTGGAATACTAAGTCC 7206 Query 8067 GGCCGGAGCCGTCATTGAGTCTCCCTTCACGTCCAACCAAAACGAATCTTCTGAACAGTC 8126 | |||| |||||| || || || |||| ||||||||||| ||||| | |||||| Sbjct 7205 TGAAGGAGACGTCATAGAATCACCGATCACATCCAACCAAAAAGAATCACCAGAACAGCT 7146 Query 8127 TACGGTTGTATCGTACCAGTTATCTATTGCACGCTTATGATATGGTTCTACAGCTTCCAT 8186 ||||| || |||||||||| |||||| | | || || ||||| || || ||||| | Sbjct 7145 GACGGTAGTTTCGTACCAGTCATCTATAGATAGTTTGTGGTATGGCTCCACGGCTTCGCT 7086 Query 8187 CCAGCATCCTGCGCTCACCCAGCTAATCAGAGGGTATGACCCTCTTGGATCATGCCTACT 8246 ||| || ||||| |||||||| || |||||||| ||||||| | ||| | Sbjct 7085 CCAATTACCAGCGCTAACCCAGCTTATAAGAGGGTACTCACCTCTTGAGTGATGAAATTT 7026 Query 8247 GTGATAGGCAATGTTTGAAAGACTTTC-CTCT--CCTTTCATCAGATAGTCAGGGGAACA 8303 | | | || || | || || || | ||| |||| || || ||||| | ||| Sbjct 7025 AGAAAATGAAACATTATCACCACCGTCACTATTACCTGTCATAAGGTATTCAGGTGCACA 6966 Query 8304 CTTCAACGCATTAGCCAGGGCGA-GAAGATTCTCTCCATTTGGCTCTGTCTCAGAGCGTT 8362 | | | | | || | || | ||| ||| |||||| ||| ||| || || Sbjct 6965 CCCAAGAGAACTTGCTAATGCTATTAAGTTTC-CTCCATCTGGTGATGTTATCCCGCCTT 6907 Query 8363 CCCACTGAGATATGGCAACATTAGACACGCCGACCATCTTTCCAAGTGCGGCCTGCCTGA 8422 |||| ||||| |||| | | || |||||||| |||| | || || ||||| ||| Sbjct 6906 CCCATTGAGAGATGGATGCGTGTGATACGCCGACTTTCTTAGCCAGCGCAGCCTGTGTGA 6847 Query 8423 TCTTGAGTTCTTTTCTCCGAGCGCGAATGCGCTCTCCCATCAATTGAGT-TTTCATAGTT 8481 ||| || |||||||| || |||||| || || || | ||| | ||||||||| Sbjct 6846 GCTTAAGCTCTTTTCTTCGCAATTTAATGCGGTCGCCGAT-ATTTGTTTCATTCATAGTT 6788 Query 8482 AAGACATCTTAAATAAACTTGACTTAAGATTCCT-TTAGTGGATAATTTAAGTGTTCTTT 8540 ||| ||||||||| |||||||||||| |||| | | |||||||||| |||| Sbjct 6787 AAGTAATCTTAAATCTTCTTGACTTAAGAGTCCTAAAAATACATAATTTAAGATGTCTTA 6728 Query 8541 AATTTCGGAGCGAGT--CTATGTACAAGAAAGATGTTATCGACCACTTCGGAACCCAGCG 8598 ||| |||| || |||| ||| | || | || | |||| || | ||||| Sbjct 6727 AAT---GGAGGTTGTAATTATGCTCAAAGATGAAGCAATTAAATACTTTGGTTCTCAGCG 6671 Query 8599 TGCTGTAGCTAAAGCGTTAGGCATTAGCGACGCAGCAGTCTCTCAGTGGAAGGAAGTCAT 8658 ||| | ||| || ||| | | ||| ||||||| || |||||||| ||||| || Sbjct 6670 CGCTATCGCTGAAAAATTAAAAGTAACTGACTCAGCAGTATCGCAGTGGAAAGAAGTAAT 6611 Query 8659 CCCAGAG 8665 || ||| Sbjct 6610 TCCTGAG 6604 Score = 143 bits (158), Expect = 7e-30 Identities = 263/384 (68%), Gaps = 6/384 (2%) Strand=Plus/Minus Query 4171 TTGCCACCAAGCATTTGCATGGTTCCACCAACGCCCACGATGACTTCGGTAGTGAACCTA 4230 || ||||| ||||||||||| | || || | || | ||||| || ||| | | Sbjct 12597 TTACCACCTAGCATTTGCATTGACCCGCCGATATTTACTACCACTTCCGTTGTGTATCGG 12538 Query 4231 TCCTGTCCGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTTCCTTCAAGATAAACCTCA 4290 || || |||||||| || |||||||| | || ||| ||||| | || |||| Sbjct 12537 TCTTGACCGCTTTGGTCTTGCCATTTACGCGTTTGCAGAGAGCCTTCGATGTATACCTGG 12478 Query 4291 GAGCCTTTTCGCAGATATTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACGCGG 4350 |||||| ||||||||||| |||| ||| || | || ||| |||||||| || Sbjct 12477 CTTCCTTTTTTCAGATATTCGCCTGCAACTTCAGCTAACTTGCCGAAAATTACCACTCGA 12418 Query 4351 TGCCACTCCGTCTGCTC---CTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGAC 4407 ||||| || || | ||| | || || || | ||| || |||||||| ||| || Sbjct 12417 TGCCATTCGGTTTTCTCGCGCATT---TCACCCGATTGTTTGTCACGCCACGATTCCGAT 12361 Query 4408 GTAGCAACTGTAAGGTTTGCAAATGCCGTTCCTGATGGTGAATATCTGATTTCTGGATCA 4467 || || | ||| || ||||| | ||| |||| ||| |||| ||||| || || Sbjct 12360 GTGGCTAGTGTGAGATTTGCTACTGCTCCCCCTGCTGGCATGTATCGAATTTCAGGGTCT 12301 Query 4468 TGCCCAAGGCGACCAATAATGATCACCTTATTTACGCCTCTGCTTGCCATTTATGCCGCC 4527 || || | | |||| || | ||| ||||| ||||||||| | || |||||||| || ||| Sbjct 12300 TGGCCTAAGTGACCTATGAGGATTACCTTGTTTACGCCTTTACTAGCCATTTACGCTGCC 12241 Query 4528 TGTTTTAGCTCGTTAACTCTGATG 4551 | ||| || || |||| |||||| Sbjct 12240 TCTTTAAGTTCTTTAATCCTGATG 12217 Score = 140 bits (154), Expect = 8e-29 Identities = 122/152 (80%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 13767 GATAAACTTAAGATTCGAAAACTCGCCTTAAAGCCCCGCAGTTACTGGATTAAACAAGCC 13826 |||||||| || || || | || |||| ||||||||||| |||||||||||||| Sbjct 152 GATAAACTCAAAGCCCGCAAGTTAGCAGTAAAACCCCGCAGTTATTGGATTAAACAAGCA 93 Query 13827 CAACAAGCCGTAAACGCCTTCATCAGAGAAAGAGACCGCGACTTACCATGTATCTCGTGC 13886 ||||||||||| ||||| | ||||||||||||||||| || || ||||| || || ||| Sbjct 92 CAACAAGCCGTCAACGCATATATCAGAGAAAGAGACCGTGATTTGCCATGCATATCATGC 33 Query 13887 GGAACGCTCACGTCTGCTCAGTGGGATGCCGG 13918 |||||| | ||||||||||||||||| || Sbjct 32 GGAACGTTTCAATCTGCTCAGTGGGATGCTGG 1 Score = 120 bits (132), Expect = 8e-23 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 11204 GTCGATTACCTGACACTAATGACCGCTGAGAAGGCCGATCGCAACGACCTTGCTTACGGC 11263 || ||||| | || || |||| |||| || || || |||||||| |||| ||||| Sbjct 4145 GTGGATTATTTAACGCTGATGAAAGCTGGCAAAGCAGACCGCAACGATATTGCCTACGGT 4086 Query 11264 ATGATCACCAAAGGACTGAAGAACCTTGCCAAAGAGCTTGAT--TGCGTTGTTGTGCTTC 11321 ||||||||||| || ||| | || || |||||||||||| | || || | | | | Sbjct 4085 GAAATCACCAAAGGCCTCAAGCAGCTAGCAAAAGAGCTTGATACTACGGTGGTAT--TAC 4028 Query 11322 TTACACAACTTAACCGCGCACTGGAAAGCCGAACCAATAAACGCCCATTACCAAGTGACT 11381 | ||||| || |||||| ||| ||| ||||||| || || || | ||||| || Sbjct 4027 TAACACAGCTAAACCGCAAACTTGAAGATAGAACCAACAAGCGACCTATGCCAAGCGATA 3968 Query 11382 CACGAGATACAGGGCAGATTGAACAGGATTGCGATTATTGGGTGGGGAT 11430 || ||||| || || || || |||||||||||||| ||| ||||||| Sbjct 3967 GCCGTGATACGGGTCAAATCGAGCAGGATTGCGATTACTGGATGGGGAT 3919 >seq1458 Length=11418 Score = 167 bits (184), Expect = 6e-37 Identities = 246/348 (71%), Gaps = 3/348 (1%) Strand=Plus/Minus Query 4174 CCACCAAGCATTTGCATGGTTCCACCAAC---GCCCACGATGACTTCGGTAGTGAACCTA 4230 || || | ||||||||| || || |||| | || | |||||| || ||| | | | Sbjct 11201 CCGCCTAACATTTGCATTGTACCGCCAATCGGGTTGACAACGACTTCAGTCGTGTAACGA 11142 Query 4231 TCCTGTCCGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTTCCTTCAAGATAAACCTCA 4290 ||||| || || |||||||||||||| | ||| |||| ||||| | ||| |||| | Sbjct 11141 TCCTGACCACTCTGATCCTGCCATTTACGGGTCTGCAAAGCACCTTCGATATAGACCTGA 11082 Query 4291 GAGCCTTTTCGCAGATATTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACGCGG 4350 |||||||| ||||| || || | || | |||||||||||| ||| ||| ||||| ||| Sbjct 11081 GAGCCTTTACGCAGGTACTCACCAGCGACTTCTGCCAGTTTACCGAACATGACCACTCGG 11022 Query 4351 TGCCACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTA 4410 ||||| || || | ||| | ||| || ||||||||||||||||| || ||||| Sbjct 11021 TGCCATTCGGTTTTCTCTCTCATCTCACCGGTTTGCTTATCACGCCAGCTCTCGGACGTG 10962 Query 4411 GCAACTGTAAGGTTTGCAAATGCCGTTCCTGATGGTGAATATCTGATTTCTGGATCATGC 4470 || | |||| ||| |||| ||| || || ||| | | ||| ||||| ||| Sbjct 10961 GCCAGAGTAATGTTGGCAACTGCTCCACCATTCGGCATATAGCGAACTTCCGGATCCTGC 10902 Query 4471 CCAAGGCGACCAATAATGATCACCTTATTTACGCCTCTGCTTGCCATT 4518 || | ||| | | || || || |||||||||||||| |||||| Sbjct 10901 CCCAAATTACCCACTAAAATAACTTTGTTTACGCCTCTGCTGGCCATT 10854 >seq2599 Length=15424 Score = 104 bits (114), Expect = 6e-18 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 4242 TTGATCCTGCCATTTTCTTGTCCGCAATTTTCCTTCAAGATAAACCTCAGAGCCTTTTCG 4301 ||| || ||||| || | ||| |||||| || |||| ||||| || |||||| | Sbjct 83 TTGGTCTTGCCACTTGCGTGTTTGCAATTGACCCTCAATATAAATCTGGCTGCCTTTCCT 142 Query 4302 CAGATATTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACGCGGTGCCACTCCGT 4361 ||||||||| | ||||| |||||||||||| ||| || ||||| |||||||| || || Sbjct 143 CAGATATTCACCGGCAACTTCTGCCAGTTTTCCGAACAGAACCACACGGTGCCATTCTGT 202 Query 4362 CTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTAGCAACTGT 4418 | ||| | |||| || | |||||| || |||| ||| || ||||| | ||| Sbjct 203 TTTTTCCCTCAGCTCACCTGATTGCTTGTCTTTCCATGCTTCAGAGGTAGCCAGTGT 259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126741289382144