Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_019522.1 Length=48454 Score E Sequences producing significant alignments: (Bits) Value seq2664 149 2e-31 seq2692 129 2e-25 seq2595 104 7e-18 seq2558 100 9e-17 >seq2664 Length=5510 Score = 149 bits (164), Expect = 2e-31 Identities = 215/304 (71%), Gaps = 11/304 (4%) Strand=Plus/Minus Query 7941 TATGAGCATGAACTTAATGGCGAAAGCCATGAGCCGAAAAGTCGGTAACCCACTACGTAA 8000 |||||| |||| | |||||||| || ||| | | || || || | || | || Sbjct 3176 TATGAGTATGAGTCTGATGGCGAAGGCAATGGGTATCAGGGTAGGCAATTCCCTGAGAAA 3117 Query 8001 GCTGGTGCTCATTAAGCTGGCTGATAACGCGAATGACAAAGGTGAATGCTGGCCGTCATA 8060 |||||||| || || | || ||||| ||||| |||||||| || |||||||| ||||| Sbjct 3116 ACTGGTGCTGATCAAATTAGCGGATAATGCGAACGACAAAGGGGAGTGCTGGCCTTCATA 3057 Query 8061 CCAGCATGTCGCTGATCAGTGTGAATGCAGCAAAAGCGCAGTAAAGGCGCACATCACAGC 8120 || ||| | |||||||| || |||||||| ||||| || || | ||||| || Sbjct 3056 CCGGCACATTGCTGATCATTGCGAATGCAGTAAAAGTGCGGTGAGAAGTCACATTCATGC 2997 Query 8121 ATTAATAAAAATGGGCTTTCTGTCAAAAGAAAACAGGCTGGGTGAAAACAACGGGAAGGG 8180 | || |||||||| || ||| | || || ||| | ||||| | | ||||| ||||| Sbjct 2996 CCTGATTAAAATGGGGTTGCTGACCAAGGAGAACCGACTGGGGAACCATAACGGCAAGGG 2937 Query 8181 GAACACGTCGAACGTTTACTATCTGA-------CGCTGGATAACCCTGTGCCACCAAAAA 8233 ||| | ||||| ||||| || |||| ||||| ||||||||||| |||||| Sbjct 2936 GAATGCCTCGAATGTTTATTACCTGAACTTATCCGCTG----ACCCTGTGCCATCAAAAA 2881 Query 8234 GCAC 8237 |||| Sbjct 2880 GCAC 2877 >seq2692 Length=686 Score = 129 bits (142), Expect = 2e-25 Identities = 189/267 (71%), Gaps = 9/267 (3%) Strand=Plus/Minus Query 20486 TTAAAGTGCCACTCACCGAACCTCAGAAGACAGGGATAGCGTCGTTCTGCCCGTGGAATA 20545 |||| |||||||| || ||||| |||| | || || || |||||||| | || | Sbjct 435 TTAACGTGCCACTGACTGAACCACAGATAGCCGGCATTGCCAGTTTCTGCCCATACAACA 376 Query 20546 TCGGTCCGGGGCGCTGTTTCCCGTCCACGTTCTACCGCAAATTAAATGCTGGTGACCGCA 20605 |||| || || | || ||| | |||||||||||||| ||| | ||||| ||||| | Sbjct 375 TCGGCCCCGGTAGATGCTTCTCTTCCACGTTCTACCGAAAACTGAATGCGGGTGATAGGC 316 Query 20606 TCGGCGCTTGCCGCGAGATTAAACGCTGGATTTGGGATGGTGGCCGCGATTGCCG-CATA 20664 || ||||| | || |||||||||||||| | || || ||| | |||||||| || | Sbjct 315 AAGGGGCTTGTCAGGAAATTAAACGCTGGATATTTGACGGCGGCAGAGATTGCCGACAGA 256 Query 20665 CGC--------TCAAATAACTGTTACGGGCAAATAGAACGCCGTGACCAGGAAGCGGAAT 20716 | | | ||| |||||| || || |||| || |||| |||||| |||||| Sbjct 255 CCCAAGGCCAAGCTAATGGCTGTTATGGTCAGGTAGAGCGACGTGCTCAGGAATCGGAAT 196 Query 20717 TATCGTGCTGGGGATTGGACGGATGAA 20743 || | || ||||| ||||| | ||||| Sbjct 195 TAACCTGTTGGGGGTTGGATGAATGAA 169 >seq2595 Length=21780 Score = 104 bits (114), Expect = 7e-18 Identities = 303/465 (65%), Gaps = 19/465 (4%) Strand=Plus/Plus Query 20293 CAGTTTCAGCAAGAAAAAGAGGGCGTGCGGCTGGTGGCTTACCCAGACGGCGGCGGAATC 20352 ||||||| | || |||||||| ||||| | || || | || | ||| || ||| Sbjct 17499 CAGTTTCTTGATGAGAAAGAGGGTAATCGGCTTATAGCCTATCAGGATGCCGGTGGTATC 17558 Query 20353 TGGACTATTTGCGGCGGTGTAACTCGCGTTGACGGTAAGCCGGTAGTAAAAGGTATGAAG 20412 ||||| || ||| | ||||| || || |||| || ||| ||||| ||||| ||| | Sbjct 17559 TGGACGATATGCCGGGGTGTGACGCGTATTGATGGAAAGGCGGTATACAAAGGGATGCAA 17618 Query 20413 TTGACCGCCGAGCAGTG---CGCGAAGATTGATGCTCTGGAGCAGAAAAAGGCGCTCGAC 20469 |||| | ||||| || |||| || | | | ||| || |||| || | ||| Sbjct 17619 CTGACTTCTGAGCAATGTGGCGCGCTGAACCGGGTT--GAAGCTGATAAAG-CGATTGAC 17675 Query 20470 TGGGTGGATCGTAACGTTAAAGTGCCACTCACCGAACCTCAGAAGACAGGGATAGCGTCG 20529 |||||| | ||||| | || || || || || || || | |||| || || Sbjct 17676 TGGGTGAAAAAGAACGTCCACGTTCCGCTGACAGAGCCACAAATCGCAGGAATTGCCAGC 17735 Query 20530 TTCTGCCCGTGGAATATCGGTCCGGGGCGCTGTTTCCCGTCCACGTTCTACCGCAAATTA 20589 || || || | ||||||||||| |||||| | || || ||||| || || | Sbjct 17736 TTTTGTCCATATAATATCGGTCCTTCAAAATGTTTCTCCTCGACATTCTATCGTAAGCTC 17795 Query 20590 AATGCTGGTGACCGCATCGGCGCTTGCCGCGAGATTAAACGCTGGATTTGGGATGGTGGC 20649 ||| | || || | ||||| || | |||||||| |||||||||| ||||| || Sbjct 17796 AATTCCGGAGATAAAAAAGGCGCCTGTCAGGAGATTAAGCGCTGGATTTACGATGGAGGG 17855 Query 20650 CGCGATTGCCGCATACGCTCAA-----------ATAACTGTTACGGGCAAATAGAACGCC 20698 || |||||||| ||| ||| || ||| || ||||| | || | Sbjct 17856 CGTGATTGCCG--TACAACCAAAGGGCAGGCGGATGGCTGCTATGGGCAGGTTTTGCGAC 17913 Query 20699 GTGACCAGGAAGCGGAATTATCGTGCTGGGGATTGGACGGATGAA 20743 |||| |||||| | ||| | | || ||||||||||| | ||||| Sbjct 17914 GTGATCAGGAATCAGAACTGGCTTGTTGGGGATTGGATGAATGAA 17958 >seq2558 Length=504 Score = 100 bits (110), Expect = 9e-17 Identities = 144/203 (71%), Gaps = 9/203 (4%) Strand=Plus/Minus Query 20542 AATATCGGTCCGGGGCGCTGTTTCCCGTCCACGTTCTACCGCAAATTAAATGCTGGTGAC 20601 || ||||| || || || ||| | |||||||||||||| ||| | ||||| ||||| Sbjct 503 AACATCGGCCCCGGTAAATGCTTCTCTTCCACGTTCTACCGGAAACTGAATGCGGGTGAT 444 Query 20602 CGCATCGGCGCTTGCCGCGAGATTAAACGCTGGATTTGGGATGGTGGCCGCGATTGCCG- 20660 | || ||||| | || || ||||||||||| | || |||||| | |||||||| Sbjct 443 AGGCAAGGGGCTTGTCAGGAAATCAAACGCTGGATATTTGACGGTGGCAGAGATTGCCGA 384 Query 20661 CATACGC--------TCAAATAACTGTTACGGGCAAATAGAACGCCGTGACCAGGAAGCG 20712 || || | | ||| ||||||||| || ||||||| |||| |||||| || Sbjct 383 CAGACCCAAGGCCAAGCCAATGGCTGTTACGGTCAGGTAGAACGACGTGCTCAGGAATCG 324 Query 20713 GAATTATCGTGCTGGGGATTGGA 20735 ||| || | || ||||| ||||| Sbjct 323 GAACTAACCTGTTGGGGGTTGGA 301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154925930789888