Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_019541.1 Length=45364 Score E Sequences producing significant alignments: (Bits) Value seq2814 96.9 1e-15 >seq2814 Length=35408 Score = 96.9 bits (106), Expect = 1e-15 Identities = 273/423 (65%), Gaps = 7/423 (2%) Strand=Plus/Minus Query 5649 ATGCGTGACTATGGGAAAGTCTCACCACATTTCTGGACGGGAACTACGGGaaaaaaaCTT 5708 |||||||| || || || || || || || || |||| || | ||||| || | | Sbjct 25201 ATGCGTGATTACGGAAAGGTTTCTCCGCAATTTTGGATTGGGAAAACGGGTAAGGAGATC 25142 Query 5709 CGTCAAACA---CCTGAAGGCT-TAATTGTCGCTATGTATTTAATGACAAGCCCTCACGC 5764 || ||| | | ||| |||| | ||||| | ||||| | | || | ||| ||||| Sbjct 25141 CGAGAAAAAGGGCATGA-GGCTCTTATTGTGTCGATGTACCTGCTTACGAACCCACACGC 25083 Query 5765 GAACATGCTTGGCTTGTATTACATACCCCTTCTATATATTGCTCATGAAACTGGCTTGGG 5824 |||||| | || |||||||| |||| || | |||||||| ||||||||||| |||| Sbjct 25082 AAACATGATCGGTATGTATTACCTACCAATTATCTATATTGCGCATGAAACTGGGCTGGG 25023 Query 5825 CTTTGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAGCGGGGTTTTGTAGCTATGA 5884 ||| |||| ||| |||| ||||| |||||| Sbjct 25022 CTTAGAAGGGGCTTCAAAGGGGCTTCAAAGGTGTGTTGAGTCGGGTTTTTGCCACTATGA 24963 Query 5885 CGAAGCCACGGAGACAGTCTGGGTGCACGAGATGGCACGTTTTCAAGTAGCTGAGTCATT 5944 |||| | | ||| || ||||| ||| |||||| | |||| ||||| ||||| Sbjct 24962 CGAAACGGCAGAGGTTGTTTGGGTTGTCGAAATGGCAAAGTATCAAATAGCTAGCTCATT 24903 Query 5945 AAAGCCAGCCGATAACCGCTGTAAGAACGTGCAAAAAGAGTATGATTCATTGCCGTCAAG 6004 ||| || | |||||||| |||| | |||| ||||||||| ||| || Sbjct 24902 AAAAGCATCAGATAACCGATGTATAGGTATACAAAGAGAGTATGAGAGCCAGCCTAAAAA 24843 Query 6005 CCCTTATTTATCAAGCTTTTTCGATAAATATGCA-CAAGCATTTTGTATGACTCAAAAGC 6063 | | ||||||| |||| ||||||||||| | |||| ||| |||| |||||| Sbjct 24842 TCTATTTTTATCAGATTTTTACGATAAATATGAATCAAG-TTTTAACCTGACAGAAAAGC 24784 Query 6064 GTG 6066 ||| Sbjct 24783 GTG 24781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145038267080768