Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_019545.1 Length=47355 Score E Sequences producing significant alignments: (Bits) Value seq2692 206 8e-49 seq2774 165 2e-36 seq2814 141 3e-29 seq2546 107 6e-19 seq2558 87.8 5e-13 seq2675 86.0 2e-12 >seq2692 Length=686 Score = 206 bits (228), Expect = 8e-49 Identities = 341/488 (70%), Gaps = 8/488 (2%) Strand=Plus/Minus Query 44781 AAGTGCTGCCGTTCTGGGGCTGGTGCTTGCCGGTGCGTCTGCGTCAGTGATTCTCGACCA 44840 ||||||||||||| | || ||||||||| ||||||| ||| | | ||||||| || Sbjct 686 AAGTGCTGCCGTTATCGGTCTGGTGCTTTCCGGTGCAGGGGCGACCGCCATTCTCGCTCA 627 Query 44841 GTTTCTGGACGAAAAAGAAGGCAACCACACCACGGCATACCGAGATGGCTCCGGCATATG 44900 |||| |||| |||||||| ||||||| |||| || || |||| | ||||| || Sbjct 626 GTTTTTGGATGAAAAAGAGGGCAACCGATTATCGGCGTATCGGGATGCAGCTGGCATCTG 567 Query 44901 GACCATCTGTCGCGGTGCCACAAAGGTGGACGGTAAACCCGTTGTTCGGGGCATGACGCT 44960 ||| ||||| || || | || | || ||| |||||| || ||| ||| || Sbjct 566 GACAATCTGCCGGGGCGTAACCCGAATTGATGGTGCTCCCGTTCGTCAGGGTATGCAACT 507 Query 44961 GTCAAAGGCGAAATGCGACCAGGTTAACGCTATTGAACGTGA-CAGGGCGCTGGCGTGGG 45019 | || | ||||| | | ||||| | ||| || |||| || || | |||| Sbjct 506 GACACCGAACCAATGCCGTGATCTCAACGCCAAAGAAGCAGATCAGGCCGTTG-CATGGG 448 Query 45020 TGGAGCGCAATATTAAAGTGCCGCTGACGGAACCACAGAAAGCAGGTATTGCTTCTTTCT 45079 | || ||||||| ||||| ||||| |||||||||| ||| || ||||| ||||| Sbjct 447 TCAGAAGCCATATTAACGTGCCACTGACTGAACCACAGATAGCCGGCATTGCCAGTTTCT 388 Query 45080 GCCCTTACAACATCGGCCCAGGAAAATGTTTCCCGTCTACGTTCTATAAGCGAA---TTA 45136 |||| |||||||||||||| || | ||| ||| | || ||||||| | |||| | | Sbjct 387 GCCCATACAACATCGGCCCCGGTAGATGCTTCTCTTCCACGTTCT---ACCGAAAACTGA 331 Query 45137 ATGCTGGCGACCGTAAAGGAGCCTGTGAAGCTATTCGCTGGTGGATTAAAGACGGTGGCC 45196 |||| || || | |||| || ||| | | ||| | ||||| ||||| ||| Sbjct 330 ATGCGGGTGATAGGCAAGGGGCTTGTCAGGAAATTAAACGCTGGATATTTGACGGCGGCA 271 Query 45197 GCGATTGTCGTCTGACCAAAGGCCAGAAAAATGGGTGCTATGGTCAGGTAGAGCGACGAG 45256 | ||||| || | |||| ||||||| ||||| || |||||||||||||||||||| | Sbjct 270 GAGATTGCCGACAGACCCAAGGCCAAGCTAATGGCTGTTATGGTCAGGTAGAGCGACGTG 211 Query 45257 ACCAGGAA 45264 |||||| Sbjct 210 CTCAGGAA 203 >seq2774 Length=20939 Score = 165 bits (182), Expect = 2e-36 Identities = 227/311 (73%), Gaps = 11/311 (4%) Strand=Plus/Minus Query 10 CTGACAATAAAGCAAGAGGCTTTCTGTCAGGCATACATCGA-AACG--GGTAATGCTTCT 66 |||||| |||||||||| |||||||||||||||||||| || ||| ||||||||||| Sbjct 16840 CTGACACTAAAGCAAGAAGCTTTCTGTCAGGCATACATAGAGAACAAAGGTAATGCTTCG 16781 Query 67 GAGGCTTATCGGACGGCGTATGCTGCTGACAAGATGAAGCCGGAGGCAGTACATGTTCAA 126 ||||| || || || |||||||| |||| |||||||||| || || | |||||| | Sbjct 16780 GAGGCATACCGAACTGCGTATGCCGCTGGAAAGATGAAGCTAGAATCAATCCATGTTAAT 16721 Query 127 GCATGTAAGTTGCAGGATAACCCTAAGATAGCCCTAAGGATAAAAGA-ATTGAGGGGCGA 185 ||| |||| || | || || ||||| | || |||||||| || || | || | Sbjct 16720 GCAAGTAAATTACTGGCAGACGCTAAGGTTGCACTAAGGATTTCGGAGCTTCA---GCAA 16664 Query 186 GATTA---AGCAACGCCATAACGTCACCGTCGATTCTCTCCTCGCTGAACTGGAAGAGGC 242 || | | ||| | || || ||||||| | | | | || || ||||| || || Sbjct 16663 GAGCACCGAACAAAG-CACGACATCACCGTGGCTGATTTACTTAAAGAGCTGGACGAAGC 16605 Query 243 CAGGCAGAAAGCCTTAAGCGCCGAGACGCCACAATCATCTGCAGCTGTAGCGGCGACAAT 302 || ||| ||| |||| |||||| || || ||| |||| ||||| ||||| || || || Sbjct 16604 AAGACAGGCAGCATTAACCGCCGAAACCCCGCAAGCATCCGCAGCCGTAGCCGCTACGAT 16545 Query 303 GGGTAAGGCTA 313 ||||||||||| Sbjct 16544 GGGTAAGGCTA 16534 >seq2814 Length=35408 Score = 141 bits (156), Expect = 3e-29 Identities = 317/473 (67%), Gaps = 5/473 (1%) Strand=Plus/Minus Query 29766 CTCATCAGGGCTGTACACGCCGAGGATCACTTCCGGGCAGTACAGGCGAGCCCAATATTT 29825 ||||||||| | || | || | || || || || || ||||| |||||||||||||| Sbjct 29070 CTCATCAGGTGTATAGATACCTAAAATAACCTCAGGACAATACAGTCGAGCCCAATATTT 29011 Query 29826 AACGCCCAGATAGGCAATTTGCTGTTTAGGGTTTGAAACCCATAGCGGAGAATTGCGGGT 29885 ||| | || || || ||||||||||| || |||| |||||| || || || || ||||| Sbjct 29010 AACTGCAAGGTACGCCATTTGCTGTTTGGGATTTGTAACCCAAAGAGGTGAGTTACGGGT 28951 Query 29886 AACAACGCCGGAGAGGTAAAGAGGTTCTCCCCAGGTGATTTCAGATTCACCCCGCAGAAT 29945 |||| | ||| | ||||| || ||||| || |||||| |||||| || | ||| Sbjct 28950 TACAATACTGGATAAGTAAATTTTCTCACCCCATGTAATTTCATTTTCACCACGTAAAAT 28891 Query 29946 GGCACCAACCTGAACGAACAGGCCGATCTCGTCCTCATCCGTCCAGCCACGAACGCGCTC 30005 |||||||| | | | | || |||||| |||| ||||| ||||||| | | Sbjct 28890 CGCACCAACACGGATCCATAACCCTTGCTCGTCTGCATCAGTCCAATCACGAACTCTTTT 28831 Query 30006 AGTGACGGTGTACTTCCCATTTTTA-CCGTTTTTATCGCGTGTGATTTCCTGTGTCCTGG 30064 ||| | || ||||| | |||||||| | | | | | ||| | | | | Sbjct 28830 CATGATGTCATAAGATCCATTGCGACCCGTTTTTGTTTC-TTTCACTTCTTTGCTTTTAG 28772 Query 30065 TGCAGCGCTCCCAGTCA---CCCCCATAGCGGTAATGAAAACGGCCATGAATGGCACTGG 30121 | ||||| || | | ||| ||||||||||||||| ||||| || | | Sbjct 28771 TTACTTTATCCCATCCATTTTCGCTATATTCGTAATGAAAACGGCCTTGAATTGCTTTTG 28712 Query 30122 AGCTTGCGATTACTGCGTTGACCAGTTGTGCCTCGTAACCAAGAACACCGTTAACCAGGT 30181 | || | | | || || || | ||| ||||| || ||||| |||||||| | || Sbjct 28711 AACTAGATACCAAAGCATTAACTAATTGGGCCTCATAGCCAAGCGTACCGTTAATGATGT 28652 Query 30182 GTGTTTTCTGAGCCACAGCGTAAGGGTTCATGCCCCATTGCATAGCCTGCATG 30234 | ||||| || || ||||| | ||||||||| ||| || ||||||||| Sbjct 28651 GGGTTTTTTGGGCTACAGCAAATGGGTTCATGTTCCACTGTGCCGCCTGCATG 28599 Score = 136 bits (150), Expect = 1e-27 Identities = 240/345 (70%), Gaps = 5/345 (1%) Strand=Plus/Minus Query 30560 TATTCCAGCATGCCAAGTTCCAGCAACTCGGTAGACGCCTCAATGATGGCGACCCAGTGG 30619 ||||||| ||| | ||| | ||||| | || || || | || || ||||||||| Sbjct 28258 TATTCCAAGCGGCCTAATTCTAATAACTCTGGTGAGGCTTCGACAATTGCAACCCAGTGG 28199 Query 30620 TAGTTCTCGTCTTTGTTGACGAAAATCCAGAAAAACTGGTCCAGCGCCGCAGTTTCGCAG 30679 || || |||||||| |||||||| |||||||| |||||||| ||| || | |||||| Sbjct 28198 TAATTTTCGTCTTTATTGACGAATATCCAGAAGAACTGGTCTAGCATGGCGATATCGCAG 28139 Query 30680 TACATGGCCGCGCTCAGGTGATAGTCCCGATCGATGATTTCACGGTGCAACTTCGCACGC 30739 ||||| || ||||| | || || || |||| ||||||||| | | | | | | Sbjct 28138 TACATTGCGGCGCTGACATGGTAATCACGATTGATGATTTCTTTGCGTATCATTGAGGTG 28079 Query 30740 AGGCCTTCCTGCTTG-ATGTTCCACATGCTGATAGTTTTCAGGTCGGCGCCAATGCGCAG 30798 | | ||||||||| || || ||| | | | ||| ||||| ||||| | || Sbjct 28078 ATAGCATCCTGCTTGTATCGACCTAATGAAGCT-GATTTAAGGTCAAAGCCAACTCTTAG 28020 Query 30799 GCCGCC--CATA-TCGATCTCAAGGTCAGGGCGTACCCGAACTTCCAACCCGGTTTCCTC 30855 | | |||| | |||||| | |||||| || || |||||||| || || || || || Sbjct 28019 GTTTTCGTCATACTGGATCTCTAAGTCAGGACGCACGCGAACTTCTAAGCCTGTATCATC 27960 Query 30856 ATCAATCCCAAAATAGCTCACCTCGACAGCGCGGCTTGGGTGAGT 30900 || || || ||||||| || || || |||||| | |||||||| Sbjct 27959 GTCGATACCGTAATAGCTAACTTCAACTGCGCGGTTAGGGTGAGT 27915 >seq2546 Length=22922 Score = 107 bits (118), Expect = 6e-19 Identities = 151/210 (72%), Gaps = 9/210 (4%) Strand=Plus/Minus Query 12260 ATCTCAGAGTTCATTGACCTGCCATTAGCTTTGGCGCGTTCGGCTATGGCGTCGCGCATC 12319 |||||||| ||||| |||| ||||| || || | ||| || | || ||||||||| Sbjct 6118 ATCTCAGAATTCATAGACCGTCCATTTTGCTTAGCACTTTCAGCAACAGCATCGCGCATC 6059 Query 12320 CCGTCCGGGAAGCGGAGGTTGAACTTATCTTGCATCTGGCTTGGGTACTTACTCA----T 12375 || || || || ||||| ||||||||||||||||| || ||||| ||||| ||| | Sbjct 6058 CCCTCTGGAAATCGGAGATTGAACTTATCTTGCATTTGACTTGGATACTTTGTCATCTTT 5999 Query 12376 AACATCACCTGAGAATATTTTGAAAATTATTATGGGGCCAACTTGACATATCGCGCAATG 12435 || || | | | | |||| |||| | || ||||||||| ||||||||| Sbjct 5998 GTATTCCCCATACACTGAT---AAAAATATTGTAGGATTAACTTGACACCCCGCGCAATG 5942 Query 12436 GTGTTAACTTAATATCA--GGTGTTAACTT 12463 ||| ||| ||||||||| ||||| || || Sbjct 5941 GTGGTAAATTAATATCAATGGTGTCAAATT 5912 >seq2558 Length=504 Score = 87.8 bits (96), Expect = 5e-13 Identities = 126/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 45087 CAACATCGGCCCAGGAAAATGTTTCCCGTCTACGTTCTATAAGCGAATTAATGCTGGCGA 45146 |||||||||||| || ||||| ||| | || |||||||| | | | ||||| || || Sbjct 504 CAACATCGGCCCCGGTAAATGCTTCTCTTCCACGTTCTACCGGAAACTGAATGCGGGTGA 445 Query 45147 CCGTAAAGGAGCCTGTGAAGCTATTCGCTGGTGGATTAAAGACGGTGGCCGCGATTGTCG 45206 | |||| || ||| | | || | ||||| ||||||||| | ||||| || Sbjct 444 TAGGCAAGGGGCTTGTCAGGAAATCAAACGCTGGATATTTGACGGTGGCAGAGATTGCCG 385 Query 45207 TCTGACCAAAGGCCAGAAAAATGGGTGCTATGGTCAGGTAGAGCGACGAGACCAGGAA 45264 | |||| ||||||| ||||| || || ||||||||||| ||||| | |||||| Sbjct 384 ACAGACCCAAGGCCAAGCCAATGGCTGTTACGGTCAGGTAGAACGACGTGCTCAGGAA 327 >seq2675 Length=1170 Score = 86.0 bits (94), Expect = 2e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 44776 AAGTTAAGTGCTGCCGTTCTGGGGCTGGTGCTTGCCGGTGCGTCTGCGTCAGTGATTCTC 44835 |||||||||||||||||| | || ||||||||| | |||||| ||| | | |||||| Sbjct 58 AAGTTAAGTGCTGCCGTTATCGGTCTGGTGCTTTCTGGTGCGGGGGCGACCGCCATTCTC 117 Query 44836 GACCAGTTTCTGGACGAAAAAGAAGGCAACCACACCACGGCATACCGAGATGGCTCCGGC 44895 | |||||| |||| || ||||| || |||| |||| || | |||| |||| Sbjct 118 GCTCAGTTTTTGGATGAGAAAGAGGGGAACCGATTATCGGCGTATCAGGATGCAGGCGGC 177 Query 44896 ATATGGACCATCTGTCGCGG 44915 || ||||| ||||| || || Sbjct 178 ATCTGGACAATCTGCCGGGG 197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151409250396256