Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_019704.1 Length=44375 Score E Sequences producing significant alignments: (Bits) Value seq2599 194 5e-45 seq2692 174 4e-39 seq2595 158 3e-34 seq2814 127 6e-25 seq2766 87.8 5e-13 seq2558 87.8 5e-13 seq2565 80.6 8e-11 >seq2599 Length=15424 Score = 194 bits (214), Expect = 5e-45 Identities = 247/340 (73%), Gaps = 0/340 (0%) Strand=Plus/Plus Query 33940 GAACAACCGGGAGGTCGTATGGCCGACCTGTCGAACGGGTATACCAAGGTCGCTAACGAG 33999 |||||||||| | || |||| || || || | ||||||| || || || || | Sbjct 6420 GAACAACCGGAGGTTCAGGTGGCTGATCTTTCAGATGGGTATATGAAAGTAGCCAATAAA 6479 Query 34000 ATCCAACAGCTTAAGCCTCGCCTGAGACTGTCAGGCCGGGAATGGCAATGTTTTGAGGCG 34059 || ||||| || || || || || ||| | || || ||||||||||| || |||||||| Sbjct 6480 ATACAACAACTCAAACCCCGTCTAAGATTATCGGGGCGGGAATGGCAGTGCTTTGAGGCT 6539 Query 34060 GTGATCTGGCTTACCTACGGCTGGAACAAGAAACAGGACCGCGTGACAAATACGGTTATT 34119 || || ||||| || ||||| ||||| || ||||| || | || || || || || | Sbjct 6540 GTTATTTGGCTAACTTACGGATGGAATAAAAAACAAGATAGGGTAACTAACACTGTCTTG 6599 Query 34120 GCCGAGCTTACGGGCCTGAGCGATACGCATGTATCGGACGCGCTTAAGTCTCTCGCAGAA 34179 | ||||| || || | | ||||| ||||| || || || |||| || || ||||| Sbjct 6600 TCTGAGCTGACTGGATTAGGTGATACACATGTTTCTGATGCAATTAAATCCCTTGCAGAG 6659 Query 34180 CGCAAAATCATCTTTTCACAGAAGCAGGGCATGATGAAAATCGTCGGTGTAAACACTGAC 34239 | ||||| || ||| || ||||| || | ||||||| | ||||||||||| ||||| Sbjct 6660 AGGAAAATTATTTTTAGTCATAAGCAAGGAACGATGAAATTAGTCGGTGTAAATACTGAG 6719 Query 34240 CTTTCAGCATGGATTTTAGACAAACCGGAAACGGGAAGAA 34279 ||||| | ||||||||||||||| | ||||||||| || Sbjct 6720 CTTTCTGAGTGGATTTTAGACAAAAAGAAAACGGGAAAAA 6759 >seq2692 Length=686 Score = 174 bits (192), Expect = 4e-39 Identities = 345/508 (68%), Gaps = 12/508 (2%) Strand=Plus/Minus Query 41813 GGTTTGATTCTTGCCGGGGCTTCCGCACCCGTGATTCTCGATCAGTTTCTGGATGAGAAA 41872 ||| || | ||| |||| || || ||| ||||||| ||||||| ||||||| ||| Sbjct 670 GGTCTGGTGCTTTCCGGTGCAGGGGCGACCGCCATTCTCGCTCAGTTTTTGGATGAAAAA 611 Query 41873 GAGGGTAACAGCTTGACAGCATATCGCGACGGCGGCGGACTCTGGACCATTTGCCGTGGT 41932 ||||| ||| | || | || ||||| || | | || ||||||| || ||||| || Sbjct 610 GAGGGCAACCGATTATCGGCGTATCGGGATGCAGCTGGCATCTGGACAATCTGCCGGGGC 551 Query 41933 GCAACAATGGTTGATGGCAAGCCAGTAGTACAGGGCATGAAGCTGTCAGCTGAGAAATGC 41992 | ||| ||||||| || || ||||| ||| | ||| || | | ||||| Sbjct 550 GTAACCCGAATTGATGGTGCTCCCGTTCGTCAGGGTATGCAACTGACACCGAACCAATGC 491 Query 41993 GCCCAGGTAAACGCCATTGAACGCGACAAGGCGCTGGCGTGGGTTGACCGAA---ATATC 42049 | | ||||||| ||| || |||| | || ||||| | ||| |||| Sbjct 490 CGTGATCTCAACGCCAAAGAAGCAGATCAGGCCGTTGCATGGGT---CAGAAGCCATATT 434 Query 42050 AAAGTACCACTGACCGAACCACAGAAAGCGGGTATCGCTTCTTTCTGCCCATATAACATC 42109 || || |||||||| |||||||||| ||| || || || |||||||||||| |||||| Sbjct 433 AACGTGCCACTGACTGAACCACAGATAGCCGGCATTGCCAGTTTCTGCCCATACAACATC 374 Query 42110 GGCCCCGGAAAATGCTTCCCATCGACCTTCTA---TAAGCGCATCAACGCAGGTGACCGC 42166 |||||||| | ||||||| | || || ||||| || | | || || ||||| | Sbjct 373 GGCCCCGGTAGATGCTTCTCTTCCACGTTCTACCGAAAAC---TGAATGCGGGTGATAGG 317 Query 42167 ATCGGTGCATGCGAGGCAATCCGCTGGTGGATTAAAGACGGTGGCCGCGATTGCCGCCTA 42226 || || || ||| ||| | ||||| ||||| ||| | |||||||| | Sbjct 316 CAAGGGGCTTGTCAGGAAATTAAACGCTGGATATTTGACGGCGGCAGAGATTGCCGACAG 257 Query 42227 ACCAAAGGCCAGAAGAATGGCTGCTATGGTCAGGTTGAGCGACGGGACCAGGAAAGCGCG 42286 ||| ||||||| |||||||| ||||||||||| |||||||| | |||||| | Sbjct 256 ACCCAAGGCCAAGCTAATGGCTGTTATGGTCAGGTAGAGCGACGTGCTCAGGAATCGGAA 197 Query 42287 CTGGCGTGCTGGGGGTTAGACCAATGAA 42314 | | || |||||||| || |||||| Sbjct 196 TTAACCTGTTGGGGGTTGGATGAATGAA 169 >seq2595 Length=21780 Score = 158 bits (174), Expect = 3e-34 Identities = 318/465 (68%), Gaps = 10/465 (2%) Strand=Plus/Plus Query 41855 CAGTTTCTGGATGAGAAAGAGGGTAA-CAGCTTGACAGCATATCGCGACGGCGGCGGACT 41913 |||||||| ||||||||||||||||| | |||| | ||| |||| || | ||| || | Sbjct 17499 CAGTTTCTTGATGAGAAAGAGGGTAATCGGCTT-ATAGCCTATCAGGATGCCGGTGGTAT 17557 Query 41914 CTGGACCATTTGCCGTGGTGCAACAATGGTTGATGGCAAGCCAGTAGTAC-AGGGCATGA 41972 |||||| || ||||| |||| || ||||||| ||| | ||| ||| | || ||| Sbjct 17558 CTGGACGATATGCCGGGGTGTGACGCGTATTGATGGAAAGGCGGTA-TACAAAGGGATGC 17616 Query 41973 AGCTGTCAGCTGAGAAATGCGCCCAGGTAAACGCCATTGAACGCGACAAGGCGCTGGCGT 42032 | ||| | ||||| |||| | | | | ||| ||||| || || ||| | | | Sbjct 17617 AACTGACTTCTGAGCAATGTGGCGCGCTGAACCGGGTTGAAGCTGATAAAGCGATTGACT 17676 Query 42033 GGGTTGACCGAAATATCAAAGTACCACTGACCGAACCACAGAAAGCGGGTATCGCTTCTT 42092 |||| | || || | || || ||||| || ||||| | || || || || | Sbjct 17677 GGGTGAAAAAGAACGTCCACGTTCCGCTGACAGAGCCACAAATCGCAGGAATTGCCAGCT 17736 Query 42093 TCTGCCCATATAACATCGGCCCCGGAAAATGCTTCCCATCGACCTTCTA---TAAGCGCA 42149 | || |||||||| ||||| || |||||| ||| | ||||| ||||| ||||| Sbjct 17737 TTTGTCCATATAATATCGGTCCTTCAAAATGTTTCTCCTCGACATTCTATCGTAAGC--- 17793 Query 42150 TCAACGCAGGTGACCGCATCGGTGCATGCGAGGCAATCCGCTGGTGGATTAAAGACGGTG 42209 |||| | || || | || || || ||| || | |||||| | || || | Sbjct 17794 TCAATTCCGGAGATAAAAAAGGCGCCTGTCAGGAGATTAAGCGCTGGATTTACGATGGAG 17853 Query 42210 GCCGCGATTGCCGCCTAACCAAAGGCCAGAAGAATGGCTGCTATGGTCAGGTTGAGCGAC 42269 | || |||||||| ||||||||| ||| | ||||||||||||| |||||| ||||| Sbjct 17854 GGCGTGATTGCCGTACAACCAAAGGGCAGGCGGATGGCTGCTATGGGCAGGTTTTGCGAC 17913 Query 42270 GGGACCAGGAAAGCGCGCTGGCGTGCTGGGGGTTAGACCAATGAA 42314 | || |||||| | ||||| || ||||| || || |||||| Sbjct 17914 GTGATCAGGAATCAGAACTGGCTTGTTGGGGATTGGATGAATGAA 17958 >seq2814 Length=35408 Score = 127 bits (140), Expect = 6e-25 Identities = 229/331 (69%), Gaps = 13/331 (4%) Strand=Plus/Minus Query 26527 GATGCCTCGATGATGGCGATCCAGTGGTAGTTCTCGTCTTTGTTGACGAAAATCCAGAAG 26586 || || |||| || || | ||||||||| || |||||||| |||||||| ||||||||| Sbjct 28225 GAGGCTTCGACAATTGCAACCCAGTGGTAATTTTCGTCTTTATTGACGAATATCCAGAAG 28166 Query 26587 AACTGATCCAGCGCTGCGGTTTCGCAGTACATAGCCGCGCTCAGGTGATAATCACGTTCA 26646 ||||| || ||| ||| | ||||||||||| || ||||| | || |||||||| | Sbjct 28165 AACTGGTCTAGCATGGCGATATCGCAGTACATTGCGGCGCTGACATGGTAATCACGATTG 28106 Query 26647 ATAATTTCCCGGTGTAGCCTGGCGCGCAGGCTTTCCTGCTTAACATTCCACATGCTGATG 26706 || ||||| | ||| | | | | | |||||||| || || | ||| | Sbjct 28105 ATGATTTCTTTGCGTATCATTGAGGTGATAGCATCCTGCTT--GTATCGACCTAATGAAG 28048 Query 26707 --GTTTTCAGGTC---TGCACCTATACG---CACGCCATCCAGGTCGATCTCAAGGTCAG 26758 | ||| ||||| || || | | || ||| | | |||||| | ||||| Sbjct 28047 CTGATTTAAGGTCAAAGCCAACTCTTAGGTTTTCGTCATAC---TGGATCTCTAAGTCAG 27991 Query 26759 GGCGCACACGAACTTCCAAGCCCGTCTCCTCGTCAAAACCAAAGTAGCTCACCTCAACGG 26818 | ||||| |||||||| ||||| || || ||||| | ||| | ||||| || ||||| | Sbjct 27990 GACGCACGCGAACTTCTAAGCCTGTATCATCGTCGATACCGTAATAGCTAACTTCAACTG 27931 Query 26819 CTCGGCTAGGGTGGGTCAGCAGCATGCCGGC 26849 | ||| ||||||| || | |||| | || || Sbjct 27930 CGCGGTTAGGGTGAGTTACCAGCTTTCCAGC 27900 >seq2766 Length=35022 Score = 87.8 bits (96), Expect = 5e-13 Identities = 153/221 (69%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 8046 GTAAACCGGGGAAATTTACCGGCCATTAAACTCGGTACCGCAAGCGTGCGACTTTCCCGC 8105 || ||||| || |||||||| || ||| || ||||| ||||| || | |||||| || Sbjct 15132 GTTAACCGAGGGAATTTACCTGCAATTGTTCTAGGTACTGCAAGAGTTCAACTTTCACGA 15073 Query 8106 AGAAAACGGGACAAGAAAGGGGCCA--ACAGCGTTCTGCGCATAGGGCCATTTCGTTTTC 8163 || | || |||||| | || |||| ||| || | || |||| ||||| Sbjct 15072 AGTCGA--GGTATTGAAAGGCGACACAACAGTGTTTTGAAAGTCGGTAAATTTACTTTTC 15015 Query 8164 CGGGCGGCTTTATCCAGCAACTTAAAAATGGTCGCTGGCATGTCATGAGGCGGACTTCAA 8223 || | |||||||||||||| || ||||| ||||||||||||||| ||| | | Sbjct 15014 ATGGTGCGTTTATCCAGCAACTGAATAATGGCCGCTGGCATGTCATGCAACGGGTTGGGA 14955 Query 8224 AACCTCGTTACCCCATTGAAGTGGTCAGCATCCCGCTGGCA 8264 || || || || |||||||| |||| || ||| | ||| Sbjct 14954 AAAGCCGATATCCGATTGAAGTTGTCAAAATTCCGTTAGCA 14914 >seq2558 Length=504 Score = 87.8 bits (96), Expect = 5e-13 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42104 AACATCGGCCCCGGAAAATGCTTCCCATCGACCTTCTATAAGCGCATCAACGCAGGTGAC 42163 |||||||||||||| ||||||||| | || || ||||| | | || || ||||| Sbjct 503 AACATCGGCCCCGGTAAATGCTTCTCTTCCACGTTCTACCGGAAACTGAATGCGGGTGAT 444 Query 42164 CGCATCGGTGCATGCGAGGCAATCCGCTGGTGGATTAAAGACGGTGGCCGCGATTGCCGC 42223 | || || || ||| |||| | ||||| ||||||||| | |||||||| Sbjct 443 AGGCAAGGGGCTTGTCAGGAAATCAAACGCTGGATATTTGACGGTGGCAGAGATTGCCGA 384 Query 42224 CTAACCAAAGGCCAGAAGAATGGCTGCTATGGTCAGGTTGAGCGACGGGACCAGGAAAGC 42283 | ||| ||||||| |||||||| || |||||||| || ||||| | |||||| Sbjct 383 CAGACCCAAGGCCAAGCCAATGGCTGTTACGGTCAGGTAGAACGACGTGCTCAGGAATCG 324 Query 42284 GCGCTGGCGTGCTGGGGGTTAGACCAATGAAAATTA 42319 | || | || |||||||| || ||| | |||| Sbjct 323 GAACTAACCTGTTGGGGGTTGGATGAATAGACATTA 288 >seq2565 Length=10326 Score = 80.6 bits (88), Expect = 8e-11 Identities = 278/432 (64%), Gaps = 29/432 (7%) Strand=Plus/Plus Query 41673 CGACTGGGCAATT---ATTGTCGGTATCGCATGCACGGTAATCACCTGTGCAGTGAACTG 41729 ||||||||| || |||| | |||| || ||| || ||||| ||| |||||||| Sbjct 9917 CGACTGGGCTATCGTCATTGGCATTATC---TGTACGATAGCCACCTTTGCCGTGAACTG 9973 Query 41730 GTATTTCCGCTGGAAAGAAC-GGGAGGATCGGCGCAATGGCTATGTCTCTAAAGCTGAAG 41788 ||| | | ||| || |||| || ||||||||| |||| ||| Sbjct 9974 GTACTAC-------AAGCACAAGGAGCATACCCGCAATGGC---------AAAGGGCAAG 10017 Query 41789 AATAAATTGAGCGCAGCGGTCGTTGGTTTGATTCTTGCCGGGGCTTCCGCACCCGTGATT 41848 | ||| | | |||||||| | ||| || | || | || || ||| | | || Sbjct 10018 ACTAAGCTTACGGCAGCGGTTATAGGTCTGGTGCTAACGGGTGCAGGCGCTACGGCAATA 10077 Query 41849 CTCGATCAGTTTCTGGATGAGAAAGAGGGTAACAGCTTGACAGCATATCGCGACGGCGGC 41908 |||| |||||| || || |||||||| || ||| | || | || ||||| |||| ||| Sbjct 10078 CTCGCTCAGTTCCTCGACGAGAAAGAAGGCAACCGGTTATCGGCGTATCGGGACGCAGGC 10137 Query 41909 GGACTCTGGACCATTTGCCGTGGTGCAACAATGGTTGATGGCAAGCCAGTAGTACAGGGC 41968 || ||||||| || ||| | || | || ||||||| || || ||||| Sbjct 10138 GGCATCTGGACAATCTGCAGGGGCGTGACCCGAATTGATGGTGCTCCGGTCAGGCAGGGT 10197 Query 41969 ATGAAGCTGTCAGCTGAGAAATGCGCCCAGGTAAACGCCATTGAACGCGACAAGGCGCTG 42028 ||| | ||| || | | ||||| | | ||||| | ||| || |||| | Sbjct 10198 ATGCAACTGACACCGAACCAATGCCGTGACCTTAACGCGAAAGAAGCGGAGCAGGCCATT 10257 Query 42029 GCGTGGGTTGACCGAA---ATATCAAAGTACCACTGACCGAACCACAGAAAGCGGGTATC 42085 || ||||| | ||| ||||||| || |||||||| ||||| |||| ||| || || Sbjct 10258 GCATGGGT---CAGAAGCCATATCAACGTGCCACTGACTGAACCGCAGATAGCAGGCATT 10314 Query 42086 GCTTCTTTCTGC 42097 || ||||||| Sbjct 10315 GCCAGTTTCTGC 10326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141873574715616