Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_019710.1 Length=40710 Score E Sequences producing significant alignments: (Bits) Value seq348 187 6e-43 seq2680 104 6e-18 seq2638 80.6 7e-11 >seq348 Length=55286 Score = 187 bits (206), Expect = 6e-43 Identities = 295/423 (70%), Gaps = 0/423 (0%) Strand=Plus/Minus Query 7873 CGGCGCGTTTACCGGTCGCCCGGTTGAGAAAGAAATCACCTGGACGCAAGGCGATaaaaa 7932 ||||||||| ||||| |||||||| || || |||||| |||| ||| ||||| | | Sbjct 16536 CGGCGCGTTCACCGGCCGCCCGGTGGAAAAGGAAATCCGTTGGAAGCAGGGCGACGAGGA 16477 Query 7933 aaTCACCGCGACCGTGTATGTTCGCCCGATGGGTTATCACACAGCAACGTCCGATGTGCT 7992 | ||||| ||||||||||| || ||| |||| | || | || ||| || ||||| Sbjct 16476 GCTGACCGCCACCGTGTATGTGCGGCCGCTGGGATTCCAGGCGGCGGTGTCGGACGTGCT 16417 Query 7993 GGCTTTTGGTGGTAAGGTCGATGGTGTGGCAGGGCGTATCGCCGCATCCATCTGCGATGA 8052 | | ||| ||| || ||||| || || ||||| || ||||||||| | Sbjct 16416 GTCGGCCACGAACAAGCACGACGGCGTGGCCGGCCGCATCGCGGCCAGCATCTGCGACCA 16357 Query 8053 ACATGGTAAACCCATCTTCACCCCGGCTGACATTACTGGTGAGGCAGATCCTGAACGTGG 8112 | || || | | |||||| |||||||| || || ||||| ||||| || || || Sbjct 16356 GGACGGCAAGGCGGTGTTCACCGTTGCTGACATCACAGGCGAGGCCGATCCGGAGCGCGG 16297 Query 8113 TGCACTGGATGGCGGCCTGACGGTAGCACTGCTTCTGGCCATTCAGGAAGTTAACGATCT 8172 ||| |||| ||| | || |||| || ||||| |||| || || || ||| | || Sbjct 16296 CGCATTGGACGGCAACTTGTCGGTGGCGCTGCTGATGGCAATCGGCGAGGTGAACAACCT 16237 Query 8173 GGGAAAGACTTCGAGCTCAGCGCCGAAGACGAATTCTGGTGCGAGCTCGTCCTCAACGGA 8232 |||||| || |||||| | | | || || || | ||||||||||| ||||||||||| Sbjct 16236 GGGAAAAGCTACGAGCTGACCCCGGAGGATGAGCTGTGGTGCGAGCTGGTCCTCAACGGG 16177 Query 8233 ATCGGAGGCAGAACAATCGCCGAAGCGCGGGAAGTCCTCTCATTCAAAGAGTCCCAACTC 8292 ||||| ||| | | |||| || ||| |||| |||||| || |||| ||| ||| Sbjct 16176 ATCGGCGGCCGCAGCATCGGTGAGGCGAAGGAACGCCTCTCCATCCGGGAGTTCCAGCTC 16117 Query 8293 TGG 8295 ||| Sbjct 16116 TGG 16114 Score = 105 bits (116), Expect = 2e-18 Identities = 343/527 (65%), Gaps = 12/527 (2%) Strand=Plus/Minus Query 6995 TCCCTATGTGGTCTGGCAGAACATCACCGGTTCTCCAGAGAACTACATTGCCCAGCGCCC 7054 |||||||| ||||||||||| || ||| || |||||||| | ||||||||||| Sbjct 17640 TCCCTATGCGGTCTGGCAGACGGTCGGTGGTAGCCCCGAGAACTATTTGGCCCAGCGCCC 17581 Query 7055 TGACGCAGACTTTTTCACGCTGCAGGTGGATGCATATGCCGACACCGTGGATGAAGTGAT 7114 ||||| ||| | || ||||||||| | ||||| | | || | |||| Sbjct 17580 TGACGTGGACGCGCTGACCACGCAGGTGGACGTTTATGCAAAGAACGAAGCATCCCTGAT 17521 Query 7115 TGCCGTGGCTACTGCGCTGCGGGATGCCATTGAGCCGCACGCGCATATCACGCGCTGGGG 7174 || | || || || ||||| |||||| | || || | || | | || || |||||||| Sbjct 17520 TGAGGGTGCCACCGCACTGCGTGATGCCTTCGAACCTCGCGGGTACATAACCCGCTGGGG 17461 Query 7175 CGGACAGGAAAGAGACCCAGAAACAAAGCGCTATCGCTACTCATTCGATGTTGACTGGAT 7234 ||| ||| || || ||||| ||| | ||| ||||||||||| || ||| | Sbjct 17460 CGGCCAGATGCTTGATCCCGAAACGAAGTTGTTGCGCCTGTCATTCGATGTGGATTGGCT 17401 Query 7235 AGTCACTCGATAA----ACG-TATTATTCAACCACCGGCCTTGA--GCCGGtttttttA- 7286 ||| |||| ||| || || | ||| || || | || || |||||| Sbjct 17400 GGTCCCTCGGTAACGCCTCGCTACATCCCCACCCACGCCCCGCACTGCGGGGCTTTTTAC 17341 Query 7287 TGACC---GGAGATAACAATGTCTGTATTGACGCAAGGTACGCAGCTCTTTGTGCTCGTA 7343 || || ||||| ||| ||| | |||| ||||| || ||||| | | || | Sbjct 17340 TGCCCGCAGGAGA-AACGATGAGCATCCTGACCCAAGGAACCCAGCTGTACGGCCTGATC 17282 Query 7344 AAAGGCAAGGTGAGCGAAGTTGAATGTATCACTGCATTTTCACCCGGCAGCAATCCGGCT 7403 || ||| || |||| | || || ||||| || || ||||||| | ||||| Sbjct 17281 AACGGCGCTGTCCGCGAGATCGAGTGCATCACGGCCTTCAACCCCGGCACCGCGCCGGCG 17222 Query 7404 GACCAGATTGAAGACACCTGTCTTTCTGAACGCTTTGATCGCAGCTATAAGCGTGGTCTT 7463 |||||||| || ||||||||||| || || | | |||| ||| ||| || || Sbjct 17221 GACCAGATCGATGACACCTGTCTGTCGGAGACCAATACGCGCACCTACAAGAAGGGCCTG 17162 Query 7464 CGAACGCCTGGCACAGCATCACTGACGCTTAACGCTGATCCTAAAAA 7510 || ||||| ||| || || |||| | ||||| || || || || Sbjct 17161 CGCACGCCGGGCCAGGCGTCGGTGACCATCAACGCCGACCCGAAGAA 17115 >seq2680 Length=520 Score = 104 bits (114), Expect = 6e-18 Identities = 216/322 (67%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 15603 ACCCGGATAAATATGCCTGTATCGATACCGGAGCCATCATTGACCAACGGCCGGTGAGCG 15662 ||||||||||||| ||| |||||| ||||| | |||||| |||||||| | | Sbjct 453 ACCCGGATAAATACGCCCATATCGACACCGGTATCCGCATTGATGAACGGCCGATTTCGG 394 Query 15663 TGATCCCGCCGGGCAACCAGTCGCCGCCTGCGAATATCGTGATCAGCTCGTTTTCCGTGG 15722 | ||||| ||||| ||||| ||||| || | ||||||||| ||| |||| Sbjct 393 TTATCCCACCGGGAGTACAGTCACCGCCGAAAAACGTGGTGATCAGCAGTAGTTCGGTGG 334 Query 15723 TTCAGCAAAATATCAGCGTCGAAACAATGCGCGTGAGCTGGGACCAGGCGCAGAACGCTA 15782 | || || || | || || ||| ||||||||| || | || | |||| Sbjct 333 TGCATCAGGGAATTGCCATCACCACCTTGCAGGTGAGCTGGTCGGCGGTGGAGCAGGCTA 274 Query 15783 TCGCCTATGAAGCGCAATGGCGCCGCAACGACGGGAACTGGGTTAACGTGCCGCGCACCT 15842 | || |||||||| | ||||| || | | || |||||| | || ||||| ||| Sbjct 273 TTGCTTATGAAGCTGAGTGGCGGCGGGATAATGGCAACTGGATAGCCGCCCCGCGAACCG 214 Query 15843 CCACCACGTCATTCGACGTCCCGGGGATTTATGCCGGGCGCTACCTGGTGCGGGTGCGCG 15902 |||| || || || || ||| || || ||||| ||||| | || |||||||| | Sbjct 213 CCACACCGGGTTTTGAGGTGCCGAATATCTACGCCGGACGCTATCAGGCTCGGGTGCGGG 154 Query 15903 CAATCAATGCCGCAGAAATTTC 15924 | || || ||||| || ||||| Sbjct 153 CGATTAACGCCGCTGAGATTTC 132 >seq2638 Length=7155 Score = 80.6 bits (88), Expect = 7e-11 Identities = 98/134 (73%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 10553 AACGCCAAAGGCGGCGTTTACTCTTCTGCCGATCTCAGTCAGTACAGTAACTCTGTCGTC 10612 || ||||||||||| ||||| ||||| ||| | ||||||||||| | ||| Sbjct 6045 AATGCCAAAGGCGGGATTTACCGATCTGCTGATTTAAGTCAGTACAGCGGGCAGATTGTC 6104 Query 10613 AGCTCTCCAACACTGTTTGCCTTTGCCAAAGGGGCCGGATTGATGGGGGAGGCTGGGCCG 10672 ||| ||||| ||||| |||||||| |||| ||| ||||||| || || || ||| Sbjct 6105 AGCAGCCCAACCTTGTTTAAGTTTGCCAACGGGGGCGGCGTGATGGGCGAAGCCGGTCCG 6164 Query 10673 GAGGCTATTATGCC 10686 ||||| ||| |||| Sbjct 6165 GAGGCCATTCTGCC 6178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130145973584896