Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_019711.1 Length=47288 Score E Sequences producing significant alignments: (Bits) Value seq2629 264 3e-66 seq2270 183 9e-42 seq2599 172 2e-38 seq2766 98.7 3e-16 >seq2629 Length=15125 Score = 264 bits (292), Expect = 3e-66 Identities = 562/828 (68%), Gaps = 21/828 (3%) Strand=Plus/Minus Query 35270 TGGCATCAACGACAACGCCAATGATTTTACAGTTCCCATTGATTTCAATCATTGGGTATT 35329 ||||||| || |||||||| || ||||||||||||||||| || ||||| |||| | Sbjct 7419 TGGCATCTACTACAACGCCTATTATTTTACAGTTCCCATTAATGGGTATCATGCGGTACT 7360 Query 35330 GTGGATTGAGTGGTTTCAGGAATTTTCTACCGGCATCAATAACTAACTTTTTGAATGTCG 35389 | ||||| || ||||| || ||||| ||| ||||| | | | | ||| ||||| | Sbjct 7359 GAGGATTCAGAGGTTTTAGATATTTTGAACCAGCATCTGTTATGTATTGTTTAAATGTGG 7300 Query 35390 CCTCGTTTTCTCCTTCAAGTTTGGCGACTACCAGCTTTCCATTACGTGGTTCGACTTCTG 35449 | || || ||| |||||||| || || | ||| |||||| ||| || | | || Sbjct 7299 CTTCATTATCT------AGTTTGGCCACAACTAACTTACCATTAACTGGCTCTATATTTG 7246 Query 35450 GGTCGACGAGAATAATCATCCCCTCAGGAATACTCAGTCCTGCCGGGGCAGTCATTGAAT 35509 |||| || | |||| |||||| || |||||||| ||||||| || | ||||| |||| Sbjct 7245 GGTCAACTAATATAACCATCCCTTCTGGAATACTAAGTCCTGAAGGAGACGTCATAGAAT 7186 Query 35510 CGCCTTTAACGTCGAGCCAAAAAGAGTCTTCAGAACAATCTACCGTTGTGTCGTACCAGT 35569 | || | || || | ||||||||| || ||||||| || || || |||||||||| Sbjct 7185 CACCGATCACATCCAACCAAAAAGAATCACCAGAACAGCTGACGGTAGTTTCGTACCAGT 7126 Query 35570 TATCTATTGCACGCCTATGATATGGCTCTACAGCTTCCATCCAACATCCTGCGCTTACCC 35629 |||||| | | | || |||||||| || ||||| ||||| || ||||| |||| Sbjct 7125 CATCTATAGATAGTTTGTGGTATGGCTCCACGGCTTCGCTCCAATTACCAGCGCTAACCC 7066 Query 35630 AACTAATTAGAGGATACGAACCTCTTGGATCATGCCTGCTGTGATAGGCAATGTTTGAAA 35689 | || || ||||| ||| |||||||| | ||| | | | | || || | Sbjct 7065 AGCTTATAAGAGGGTACTCACCTCTTGAGTGATGAAATTTAGAAAATGAAACATTATCAC 7006 Query 35690 GACTATC-CTCT--CCTTTCAACAGGTAATCAGGGGAGCACTGCAAAGCCTTGGCTAAGG 35746 || || || | ||| ||| ||||| ||||| | ||| | || | ||||| | Sbjct 7005 CACCGTCACTATTACCTGTCATAAGGTATTCAGGTGCACACCCAAGAGAACTTGCTAATG 6946 Query 35747 CCAATAGGTTTTCGCCATTGGGCTCAGTTTCAGATCGC--TCCCATTGGGAAATAGCAAC 35804 | | || |||| | |||| || | | | | | ||| |||||||| || || | | Sbjct 6945 CTATTAAGTTTCCTCCATCTGG-TGA-TGTTATCCCGCCTTCCCATTGAGAGATGGATGC 6888 Query 35805 ATTAGACACGCCAACCATCTTGCCAAGGGCAGCCTGCCTAATCTTGAGTTCTTTTCTGCG 35864 | || ||||| || |||| | || |||||||| | | ||| || |||||||| || Sbjct 6887 GTGTGATACGCCGACTTTCTTAGCCAGCGCAGCCTGTGTGAGCTTAAGCTCTTTTCTTCG 6828 Query 35865 AGCGCGAATACGCTCACCCATCAGTTGTGT-ATTCATAGTTAAGACATCTTAAATAAACT 35923 ||| || || || || | |||| | ||||||||||||| ||||||||| || Sbjct 6827 CAATTTAATGCGGTCGCCGAT-ATTTGTTTCATTCATAGTTAAGTAATCTTAAATCTTCT 6769 Query 35924 TGACTTAAGATTCCT-TTGGTGGATAATTTAAGTGTTCTTTAATTTCGGAGCGAGT--CT 35980 |||||||||| |||| | |||||||||| |||| ||| |||| || | Sbjct 6768 TGACTTAAGAGTCCTAAAAATACATAATTTAAGATGTCTTAAAT---GGAGGTTGTAATT 6712 Query 35981 ATGTACAAAAAAGATGTTATTGACCACTTCGGAACCCAGCGTGCTGTTGCTAAAGCACTA 36040 ||| |||| | || | ||| | |||| || | ||||| ||| | ||| || | || Sbjct 6711 ATGCTCAAAGATGAAGCAATTAAATACTTTGGTTCTCAGCGCGCTATCGCTGAAAAATTA 6652 Query 36041 GGCATTAGCGATGCAGCAGTCTCTCAGTGGAAAGAAGTTATCCCAGAG 36088 | | || ||||||| || |||||||||||||| || || ||| Sbjct 6651 AAAGTAACTGACTCAGCAGTATCGCAGTGGAAAGAAGTAATTCCTGAG 6604 Score = 123 bits (136), Expect = 8e-24 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 38650 GTCGATTACCTGACACTAATGACCGCTGAGAAGGCCGATCGCAACGACCTTGCTTACGGC 38709 || ||||| | || || |||| |||| || || || |||||||| |||| ||||| Sbjct 4145 GTGGATTATTTAACGCTGATGAAAGCTGGCAAAGCAGACCGCAACGATATTGCCTACGGT 4086 Query 38710 ATGATCACCAAAGGACTGAAGAACCTTGCCAAAGAGCTTGAT--TGCGTTGTTGTGCTTC 38767 ||||||||||| || ||| | || || |||||||||||| | || || | | | | Sbjct 4085 GAAATCACCAAAGGCCTCAAGCAGCTAGCAAAAGAGCTTGATACTACGGTGGTAT--TAC 4028 Query 38768 TGACGCAGCTTAACCGCGCACTGGAAAGCAGAACCAATAAACGCCCATTACCAAGTGACT 38827 | || ||||| |||||| ||| ||| |||||||| || || || | ||||| || Sbjct 4027 TAACACAGCTAAACCGCAAACTTGAAGATAGAACCAACAAGCGACCTATGCCAAGCGATA 3968 Query 38828 CACGAGATACAGGGCAGATTGAACAGGATTGCGATTATTGGGTGGGGAT 38876 || ||||| || || || || |||||||||||||| ||| ||||||| Sbjct 3967 GCCGTGATACGGGTCAAATCGAGCAGGATTGCGATTACTGGATGGGGAT 3919 >seq2270 Length=26257 Score = 183 bits (202), Expect = 9e-42 Identities = 472/710 (66%), Gaps = 28/710 (4%) Strand=Plus/Minus Query 16105 TTTAAACCGGCATACAGCAACAACATGGCCTGGTGTCTGTGGGATATGCTGACCCATCCG 16164 ||||||||||| |||| ||| ||| ||| ||| | | ||| || |||||||| | Sbjct 5165 TTTAAACCGGCCTACACCAATAACCCGGCGTGGATATTCTACGATTTGGTGACCCATACC 5106 Query 16165 CGCTACGGCATGGGGAAACGTCTTGGTGC-GGCGGATGTGGATAAATGGGCGCTGTATGT 16223 || || ||||| || || | | || || || ||| || || | || ||||||| Sbjct 5105 CGTTATGGCATCGGCAAGCTGATGGGGGCATTTGGCTGT-GACAAGTTCGCCCTGTATGC 5047 Query 16224 CATCGGCCAGTACTGCGACCAGTCAGTGCCGGACGGCTTTGGCGGCACGGAGCCGCGCAT 16283 ||| | || || || |||||| |||||||| || ||||| ||||| || || ||| | Sbjct 5046 CATTGCGCAATATTGTGACCAGCTCGTGCCGGATGGATTTGGTGGCACCGAACCCCGCTT 4987 Query 16284 CACCTGTAATGCGTACCTGACCACACAGCGTAAGGCGTGGGATGTGCTCAGCGATTTCTG 16343 ||||| ||||||||| | ||| || |||||||| |||||||||| ||||| Sbjct 4986 TACCTGCAATGCGTACATCGCCAATCAACGTAAGGCACGGGATGTGCTGGATGATTTGGC 4927 Query 16344 CTCGGCGATGCGCTGTATGCCGGTATGGAACGGGCAGACGCTGACGTTCGTGCAGGACCG 16403 ||||| | | || |||||| ||| |||||||||| | ||||| | | | |||||||| Sbjct 4926 CTCGGTGTTTCGGGGTATGCAGGTCTGGAACGGGCTGCAACTGACCTGCTTTCAGGACCG 4867 Query 16404 ACCGTCGGATAAGACGTGGACCTATAACCGCAG-TAATGTGGTGATGCCGGATGATGGCG 16462 || | ||| | ||||| | | ||| | |||||||| || ||| Sbjct 4866 GCCTGCCGATCCGGTCTGGACAT-TCACCAATGCCAATGTGGT---------CGAGGGC- 4818 Query 16463 CGCCGTTCCGCTACAGCTTCAGCGCCCTGAAGGACCGCCATAATGCCGTTGAGGTGAACT 16522 || |||||| | |||| ||| | ||| |||| | |||| |||| | Sbjct 4817 --AAATTTAACTACAGTGCCGCCGCCAAGAAAGCCCGGCATACGGTGATTGAAGTGACGT 4760 Query 16523 GGATTGACCCGAACAACGGCTGGGA-----GACGGCGACAGAGCTTGTTGAAGATACGCA 16577 || | ||||| ||||||||||| | |||| || || || || ||| ||| Sbjct 4759 GGGTCAACCCGGACAACGGCTGGAAAGAAGAACGGGAACTGA--TTCAGGATGATGCGCT 4702 Query 16578 GGCCATTGCCCGTTACGGTCGTAATGTTACGAAGATGGATGCCTTTGGCTGTACCAGCCG 16637 || ||| ||| | || | || |||| ||| || || |||||||||||||| || Sbjct 4701 GG---TTGACCGGTTGGGCCTGAACGTTAAAAAGGTGACCGCGTTTGGCTGTACCAGTCG 4645 Query 16638 GGGGCAGGCACACCGCGCCGGGCTGTGGCTGATTAAAACAGAACTGCTGGAAACGCAGAC 16697 ||||||||||||||| | ||| | |||| | ||| ||||||| ||| |||||| | | Sbjct 4644 GGGGCAGGCACACCGGGTCGGTCGGTGGATCATTGAAACAGAGAAGCTCGAAACGGATTC 4585 Query 16698 CGTGGATTTCAGCGTCGG-CGCAGAAGGGCTTCGCCATGTACCGGGCGATGTTATTGAAA 16756 ||| ||||| ||| ||| ||||| || | | ||||||||| || | || | Sbjct 4584 GGTGACGTTCAGTACCGGTCGC-GAAGGCATTAACTGCATTCCGGGCGATATTGTGGACA 4526 Query 16757 TCTGCGATGATGACTATGCCGGTATCAGCACCGGTGGTCGTGTGCTGGCG 16806 | |||| | || || | | | ||| ||| || || || |||||| Sbjct 4525 TTGCCGATAACAGCTTCGCGGCTGCCCGCATCGGCGGACGGGTACTGGCG 4476 Score = 87.8 bits (96), Expect = 5e-13 Identities = 192/285 (67%), Gaps = 2/285 (1%) Strand=Plus/Minus Query 14126 GAGATTGTGGCGCTGGTCCACAGCCACCCCGGTGGTCTGCCCTGGCTGAGTGAGGCCGAC 14185 ||||||| ||| | || |||||||| || |||| ||| ||||||| | ||| Sbjct 7023 GAGATTGAGGCCATTGTGCACAGCCATCCTAACGGTCAACCCCATCTGAGTGCCGAAGAC 6964 Query 14186 CGGCGGCTGCAGGTGCAGAGTGATTTGCCGTGGTGGCTGGTCTGCCGGGGGACGATTCAT 14245 || || | |||| | | | ||||||||||| ||||||| | | | | ||| Sbjct 6963 CGCCGACAGCAGATAAAAACCAGGCTGCCGTGGTGGTTGGTCTGTGGTGATCGGGTGCAT 6904 Query 14246 AAGTTCCGCTGTGTGCCGCATCTCACCGGGCGGCGCTTTGAGCACGGTGTGAC-GGACTG 14304 | ||||| ||||||| | | ||||| ||| ||||| || || ||| || Sbjct 6903 CAATTCCGACCGGTGCCGCGTTTATTGGGGCGCGAATTTATCCACGG-GTTACAGGATTG 6845 Query 14305 TTACACACTGTTCCGGGATGCTTATCATCTGGCGGGGATTGAGATGCCGGACTTTCATCG 14364 ||| | ||| |||||||||| || |||||||||||||||||| | || ||| || Sbjct 6844 CTACTCGCTGATCCGGGATGCCTACCATCTGGCGGGGATTGAGTTAGACGATATTCCCCG 6785 Query 14365 TGAGGATGACTGGTGGCGTAACGGCCAGAATCTCTATCTGGATAA 14409 ||| || | |||||| | || ||||| || ||||| ||||| Sbjct 6784 TGATGAAGCATGGTGGAACACGGGGCAGAACCTGTATCTCGATAA 6740 >seq2599 Length=15424 Score = 172 bits (190), Expect = 2e-38 Identities = 316/454 (70%), Gaps = 8/454 (2%) Strand=Plus/Plus Query 42088 CTCACCAAAGAACAGCAGGAGTGGCTGAATGGCTGGCTTGAACTGTGGGGCGCATGGGTT 42147 || || ||| ||||||||| ||| | || |||| | | ||||||| ||||||||| Sbjct 11615 CTAACAAAACCACAGCAGGACTGGATTGATAACTGGTTAAATTTGTGGGGGGCATGGGTT 11674 Query 42148 TATTCAGGTCGTCTTGAAAAGCGCATGAGCAGCGTAATAGCGAAGTTCATGGAGAGCGTA 42207 | || | | || |||||| || | | | || ||||||||| || || Sbjct 11675 CACAGTGGCAGAATCGATAAGCGCCAGATAAACATGATTTATAAGTTCATGATGACTGTT 11734 Query 42208 GAGCCGGG-AAGAGTTATGACAAGGCCAATGTGCAACGATGATGATGGAATGTTGATTTC 42266 ||||| | ||| | | ||| | || ||||||| ||||||||||| ||||||||||| Sbjct 11735 GAGCCTCGCAAGGGGCAAGACC-GCCCTGTGTGCAATGATGATGATGGTATGTTGATTTC 11793 Query 42267 TCAGGTCGTCGATTCCGTCATGTACATTGACAAGAAAGCCTTTGGCATCCTCCTCAGCTA 42326 |||||| |||||| |||| |||| ||||||| | ||||||| ||| || | |||||||| Sbjct 11794 TCAGGTGGTCGATGCCGTTATGTGCATTGACCAAAAAGCCTATGGGATTTTACTCAGCTA 11853 Query 42327 CTACGCTCATGGTTCATCTAAGCGAGCAATTGCATCCTACTATCACGCGACTGCAAAGCC 42386 ||||||||| || |||| |||| ||||| || | || |||||| || ||| || || Sbjct 11854 CTACGCTCACGGCGCATCGAAGCTGTCAATTTCAACTTATTATCACAAGATTGCGAAACC 11913 Query 42387 ACGCAAGATG-TGTGGACGTGGTGGCGAGGGATGGAGAAAACCTTCACTGGCAACCTGTA 42445 |||| ||| || | || ||||| | | | || || ||||| | | || ||| Sbjct 11914 CCGCAGAATGATGACG-CGCTCTGGCGGGCGCTTAAGGAAGCCTTCTCGTGGGACATGTC 11972 Query 42446 GAAACGAAATTGACGACATCCTGAAAGC--GTCGTTATTTGTTTTGTACCAGCCAATGCA 42503 | ||| | || || || ||| ||| || ||| | | || || ||||| |||| Sbjct 11973 GCCGTGAAGTGGATGAAATTCTGGCAGCCAGT-GTT-TACCTATTATATCAGCCTCTGCA 12030 Query 42504 AAATGCTTTCAAAATGCGTAAACGTGTTGAGAAA 42537 |||||| || || ||||||||||| |||||| Sbjct 12031 AAATGCATTTAATTCACGTAAACGTGTAGAGAAA 12064 >seq2766 Length=35022 Score = 98.7 bits (108), Expect = 3e-16 Identities = 90/113 (80%), Gaps = 3/113 (3%) Strand=Plus/Minus Query 8150 GGCGCGTTTATTCAGCAACTGAAAAATGGCCGGTGGCATGTCATGCAGCGTGTGGCTGGG 8209 || |||||||| ||||||||||| |||||||| |||||||||||||| || || |||| Sbjct 15012 GGTGCGTTTATCCAGCAACTGAATAATGGCCGCTGGCATGTCATGCAACG---GGTTGGG 14956 Query 8210 AAAAACCGTTACCCCATTGATGTGGTGAAAATCCCGATGGCGGTGCCGCTGAC 8262 |||| ||| || || ||||| || || ||||| ||| | || |||||| || Sbjct 14955 AAAAGCCGATATCCGATTGAAGTTGTCAAAATTCCGTTAGCAAAGCCGCTAAC 14903 Score = 82.4 bits (90), Expect = 2e-11 Identities = 127/179 (71%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 14498 AATCACGCCGCAATTTACTGCGGCGACGGCGAGC-TGCTGCACCATATTCCTGAACAACT 14556 |||||||||||||| |||| || || || | | | || ||| | || | ||||| Sbjct 8070 AATCACGCCGCAATCTACTTAGGGGAACA-GACCATTTTACATCATGTCCCGAATCAACT 8012 Query 14557 GAGCAAACGAGAGAGGTACACCGACAAATGGCAGCGACGCACACACTCCCTCTGGCGTCA 14616 |||||| |||||| || | ||| | |||||| ||| || ||||| | |||||| | Sbjct 8011 GAGCAAGCGAGAGGTTTATAACGAAAGATGGCAACGAATGACTCACTCGATTTGGCGTTA 7952 Query 14617 CCGGGCATGGCGCGCATCTGCCTTTACGGGGATTTACAACGATTTGGTCGCCGCATCGA 14675 ||| |||| |||| | |||| |||||||| ||||||||||| || || |||| Sbjct 7951 CCGAAACTGGCAACCATCCGATTTTATGGGGATTTGCAACGATTTGGCCGTCGATTCGA 7893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151194857688000