Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_019715.1 Length=39578 Score E Sequences producing significant alignments: (Bits) Value seq2629 140 8e-29 seq2680 104 6e-18 >seq2629 Length=15125 Score = 140 bits (154), Expect = 8e-29 Identities = 122/152 (80%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 33723 GATAAACTTAAGATTCGAAAACTCGCCTTAAAGCCCCGCAGTTACTGGATTAAACAAGCC 33782 |||||||| || || || | || |||| ||||||||||| |||||||||||||| Sbjct 152 GATAAACTCAAAGCCCGCAAGTTAGCAGTAAAACCCCGCAGTTATTGGATTAAACAAGCA 93 Query 33783 CAACAAGCCGTAAACGCCTTCATCAGAGAAAGAGACCGCGACTTACCATGTATCTCGTGC 33842 ||||||||||| ||||| | ||||||||||||||||| || || ||||| || || ||| Sbjct 92 CAACAAGCCGTCAACGCATATATCAGAGAAAGAGACCGTGATTTGCCATGCATATCATGC 33 Query 33843 GGAACGCTCACGTCTGCTCAGTGGGATGCCGG 33874 |||||| | ||||||||||||||||| || Sbjct 32 GGAACGTTTCAATCTGCTCAGTGGGATGCTGG 1 Score = 120 bits (132), Expect = 8e-23 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 31889 GTCGATTACCTGACGCTAATGACCGCTGAAAAGGCCGATCGCAACGACCTTGCATACGGC 31948 || ||||| | ||||| |||| |||| || || || |||||||| |||| ||||| Sbjct 4145 GTGGATTATTTAACGCTGATGAAAGCTGGCAAAGCAGACCGCAACGATATTGCCTACGGT 4086 Query 31949 ATGATCACCAAAGGACTGAAGAACCTTGCCAAAGAGCTTGAT--TGCGTTGTTGTGCTTC 32006 ||||||||||| || ||| | || || |||||||||||| | || || | | | | Sbjct 4085 GAAATCACCAAAGGCCTCAAGCAGCTAGCAAAAGAGCTTGATACTACGGTGGTAT--TAC 4028 Query 32007 TGACACAGCTTAACCGCGCATTGGAAAGCCGAACCAATAAACGCCCATTACCATGTGACT 32066 | |||||||| |||||| | | ||| ||||||| || || || | ||| | || Sbjct 4027 TAACACAGCTAAACCGCAAACTTGAAGATAGAACCAACAAGCGACCTATGCCAAGCGATA 3968 Query 32067 CGCGCGATACAGGGCAGATTGAACAGGATTGCGATTATTGGGTGGGGAT 32115 || ||||| || || || || |||||||||||||| ||| ||||||| Sbjct 3967 GCCGTGATACGGGTCAAATCGAGCAGGATTGCGATTACTGGATGGGGAT 3919 Score = 98.7 bits (108), Expect = 3e-16 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 25229 CGATCACGCACTGTCTTGCGGTTGGCATCAATTAGCTTTGGAATTTCCTTCAGTTCAGCA 25288 || || ||||| || || ||||| || ||||||||||| ||||| || | || || Sbjct 9541 CGCTCTCGCACAGTTCGTCGATTGGCGTCGATTAGCTTTGGTATTTCTTTTAACTCTGCT 9482 Query 25289 ACAAGGTCTTTTCCAAGACCATCGAGATATGTTTTCGTCTGCGCAACTTTATACGCCAGA 25348 || | |||||| || || ||||| || || ||||| | || || ||||| || |||| Sbjct 9481 ACTAAGTCTTTACCGAGCCCATCAAGGTAAGTTTTTGATTGAGCGACTTTGTAGGCCAAT 9422 Query 25349 GAAGCGATCTCCTTTCTGCCCTTTGCCGTTGTGATATCAGGCACAAAGGACATAACTTC 25407 ||||| || ||||| | || || | || |||| |||||| | ||| || ||||||| Sbjct 9421 GAAGCAATTTCCTTGCGACCTTTAACAGTGGTGACATCAGGAATAAAAGAATTAACTTC 9363 >seq2680 Length=520 Score = 104 bits (114), Expect = 6e-18 Identities = 216/322 (67%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 16225 ACCCGGATAAATATGCCCGCATCGATACCGGAGCCATCATTGACCAGCGGCCGGTGAGCG 16284 ||||||||||||| |||| ||||| ||||| | |||||| | |||||| | | Sbjct 453 ACCCGGATAAATACGCCCATATCGACACCGGTATCCGCATTGATGAACGGCCGATTTCGG 394 Query 16285 TGATCCCGCCTGGTAACCAGTCGCCGCCTGCGAACATCGTGATCAGCTCGTTTTCCGTGG 16344 | ||||| || || ||||| ||||| ||| | ||||||||| ||| |||| Sbjct 393 TTATCCCACCGGGAGTACAGTCACCGCCGAAAAACGTGGTGATCAGCAGTAGTTCGGTGG 334 Query 16345 TGCAGCAAAATATCAGCGTCGAAACGATGCGCGTGAGCTGGGACCAGGCGCAGAACGCTA 16404 |||| || || | || || ||| ||||||||| || | || | |||| Sbjct 333 TGCATCAGGGAATTGCCATCACCACCTTGCAGGTGAGCTGGTCGGCGGTGGAGCAGGCTA 274 Query 16405 TCGCCTATGAAGCGCAATGGCGCCGCAACGACGGGAACTGGGTTAACGTGCCGCGCACCT 16464 | || |||||||| | ||||| || | | || |||||| | || ||||| ||| Sbjct 273 TTGCTTATGAAGCTGAGTGGCGGCGGGATAATGGCAACTGGATAGCCGCCCCGCGAACCG 214 Query 16465 CCACCACGTCATTCGACGTCCCGGGGATTTATGCCGGGCGCTACCTGGTGCGGGTGCGCG 16524 |||| || || || || ||| || || ||||| ||||| | || |||||||| | Sbjct 213 CCACACCGGGTTTTGAGGTGCCGAATATCTACGCCGGACGCTATCAGGCTCGGGTGCGGG 154 Query 16525 CAATCAATGCCGCAGAAATTTC 16546 | || || ||||| || ||||| Sbjct 153 CGATTAACGCCGCTGAGATTTC 132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126523696782720