Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_019717.1 Length=45366 Score E Sequences producing significant alignments: (Bits) Value seq2599 190 6e-44 seq2814 125 2e-24 seq2766 116 1e-21 >seq2599 Length=15424 Score = 190 bits (210), Expect = 6e-44 Identities = 246/340 (72%), Gaps = 0/340 (0%) Strand=Plus/Plus Query 35043 GAACAACCGGGAGGTCGTATGGCCGACCTGTCGAACGGGTATACCAAGGTCGCTAACGAG 35102 |||||||||| | || |||| || || || | ||||||| || || || || | Sbjct 6420 GAACAACCGGAGGTTCAGGTGGCTGATCTTTCAGATGGGTATATGAAAGTAGCCAATAAA 6479 Query 35103 ATCCAACAGCTTAAGCCTCGCCTGAGACTGTCAGGCCGAGAATGGCAATGTTTTGAGGCG 35162 || ||||| || || || || || ||| | || || || |||||||| || |||||||| Sbjct 6480 ATACAACAACTCAAACCCCGTCTAAGATTATCGGGGCGGGAATGGCAGTGCTTTGAGGCT 6539 Query 35163 GTGATCTGGCTTACCTACGGCTGGAACAAGAAACAGGACCGCGTGACAAATACGGTTATT 35222 || || ||||| || ||||| ||||| || ||||| || | || || || || || | Sbjct 6540 GTTATTTGGCTAACTTACGGATGGAATAAAAAACAAGATAGGGTAACTAACACTGTCTTG 6599 Query 35223 GCCGAGCTTACGGGCCTGAGCGATACGCATGTATCGGACGCGCTTAAGTCTCTCGCAGAA 35282 | ||||| || || | | ||||| ||||| || || || |||| || || ||||| Sbjct 6600 TCTGAGCTGACTGGATTAGGTGATACACATGTTTCTGATGCAATTAAATCCCTTGCAGAG 6659 Query 35283 CGCAAAATCATCTTTTCACAGAAGCAGGGCATGATGAAAATCGTCGGTGTAAACACTGAC 35342 | ||||| || ||| || ||||| || | ||||||| | ||||||||||| ||||| Sbjct 6660 AGGAAAATTATTTTTAGTCATAAGCAAGGAACGATGAAATTAGTCGGTGTAAATACTGAG 6719 Query 35343 CTTTCAGCATGGATTTTAGACAAACCGGAAACGGGAAGAA 35382 ||||| | ||||||||||||||| | ||||||||| || Sbjct 6720 CTTTCTGAGTGGATTTTAGACAAAAAGAAAACGGGAAAAA 6759 >seq2814 Length=35408 Score = 125 bits (138), Expect = 2e-24 Identities = 226/328 (69%), Gaps = 7/328 (2%) Strand=Plus/Minus Query 26020 GATGCCTCGATGATGGCGATCCAGTGGTAGTTCTCGTCTTTGTTGACGAAAATCCAGAAG 26079 || || |||| || || | ||||||||| || |||||||| |||||||| ||||||||| Sbjct 28225 GAGGCTTCGACAATTGCAACCCAGTGGTAATTTTCGTCTTTATTGACGAATATCCAGAAG 28166 Query 26080 AACTGATCCAGCGCTGCGGTTTCGCAGTACATAGCCGCGCTCAGGTGATAATCACGTTCA 26139 ||||| || ||| ||| | ||||||||||| || ||||| | || |||||||| | Sbjct 28165 AACTGGTCTAGCATGGCGATATCGCAGTACATTGCGGCGCTGACATGGTAATCACGATTG 28106 Query 26140 ATAATTTCCCGGTGTAGCCTGGCGCGCAGGCTTTCCTGCTTAACATTCCACATGCTGATG 26199 || ||||| | ||| | | | | | |||||||| || || | ||| | Sbjct 28105 ATGATTTCTTTGCGTATCATTGAGGTGATAGCATCCTGCTT--GTATCGACCTAATGAAG 28048 Query 26200 --GTTTTCAGGTCAGCACCGATACGCACG---CCGTCTAGGTCGATCTCAAGGTCAGGGC 26254 | ||| |||||| || | | | | |||| | |||||| | |||||| | Sbjct 28047 CTGATTTAAGGTCAAAGCCAACTCTTAGGTTTTCGTCATACTGGATCTCTAAGTCAGGAC 27988 Query 26255 GCACACGAACTTCCAGTCCCGTCTCCTCGTCAAAGCCAAAGTAGCTCACCTCAACGGCGC 26314 |||| |||||||| | || || || ||||| | || | ||||| || ||||| |||| Sbjct 27987 GCACGCGAACTTCTAAGCCTGTATCATCGTCGATACCGTAATAGCTAACTTCAACTGCGC 27928 Query 26315 GGCTCGGGTGGGTTAGCAGCATGCCTGC 26342 || | ||||| |||| |||| | || || Sbjct 27927 GGTTAGGGTGAGTTACCAGCTTTCCAGC 27900 >seq2766 Length=35022 Score = 116 bits (128), Expect = 1e-21 Identities = 361/556 (65%), Gaps = 17/556 (3%) Strand=Plus/Minus Query 8707 TGACTACCAGCGCGATGATGATATGGCGCTGTGGAGTTCTGCCGACCTGAAATATTCCAT 8766 ||| ||| | || |||||||| |||||||| ||| ||| | || | | || || Sbjct 14474 TGATTACGATCGTGATGATGAAATGGCGCTATGGGCTTCGGTTGATATCACTTACCGAAT 14415 Query 8767 TACTTACGACATGTGAGGACCCT----ATGGCCACA---CCAAACCCGCTGGCGCCAACA 8819 | || || |||| |||| | ||||| | | ||||| || | | || ||| Sbjct 14414 TGAATATGAAATGTAAGGAATTTTACGATGGCAAAAGTACCAAATCCATTAGAACCCACA 14355 Query 8820 AAAGGTGCCGGTACCACTCTCTGGGTTTACACCGGAAACGGTGACCCCTATGCCAATCCG 8879 ||||| || || || || || |||||||| || |||| | ||||||| | ||||| Sbjct 14354 AAAGGGGCTGGCACGACACTTTGGGTTTATACGGGAACAGATGACCCCACTAAGGATCCG 14295 Query 8880 CTT--TCAGACG---TTGACTGGTTGCGCCTCGCAAAGATTAAAGACCTGCAGCCCGGTG 8934 | | | ||| || ||| | | ||| | |||||| || |||| || | Sbjct 14294 TATCTTGAAACGGGTTTTACTCGATTAGCC-----AGAATTAAATCACTAGAGCCAGGGG 14240 Query 8935 AACTGACGGCTGAATCTGAAGATGACACCTACATCGATGATGAGAATGCCGACTGGACAT 8994 || | || || | | ||||||||| | ||| ||||||| || | |||||| | Sbjct 14239 AAATTACTGCGGCAAGTGAAGATGATAGCTATCTCGATGACCCTAACGGTGACTGGGAAA 14180 Query 8995 CAACGATGCAGGGGCAGAAATCAGCCGGTGAAACCAACCTGACGCTCGCGTGGATGCCGG 9054 || | ||||| | ||||| | |||||||||| | || || || ||| |||| | Sbjct 14179 ACACCACTCAGGGCGAAAAATCCTCGGGTGAAACCAGTGTCACCCTTGCATGGTTGCCTG 14120 Query 9055 GAGATTCCGGACAGCAGGACCTAGTGAACTGGTTCGATGAGGGCACCGTGAGGGGATATA 9114 | || || || | ||||| || || ||||| ||||| ||| | | || | Sbjct 14119 GTGAAGAAGGGCAAAAAGACCTTGTTAAATGGTTTGATGAAGGCCTCCCACGCTTTTACA 14060 Query 9115 AAATCAAATACCCAAATGGTGTTGTCGATGTGTTTAAGGGCTGGGTGAGCAGCCTCGGTA 9174 ||||| ||||||||||| | ||| | |||||||||||| | ||| |||| |||| Sbjct 14059 AAATCCTGTACCCAAATGGCACGCTTGATTTATTTAAGGGCTGGATTAGCGGCCTAGGTA 14000 Query 9175 AAACCATAGCGTCCAAAGAGGTCATGACCCGCACGGCCAAAATCACAAACAACGGCAAAC 9234 || |||| | |||||| ||||||||| || | || || | |||| |||| || Sbjct 13999 AATCCATTCCAATCAAAGAAACCATGACCCGAACAGTGAAGATTAAGAACACTGGCAGAC 13940 Query 9235 CATCGCTGGCAGAGGA 9250 || | ||||||| || Sbjct 13939 CAACCATGGCAGAAGA 13924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145044666863104