Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_019719.1 Length=41528 Score E Sequences producing significant alignments: (Bits) Value seq2629 120 8e-23 seq2680 104 6e-18 >seq2629 Length=15125 Score = 120 bits (132), Expect = 8e-23 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 33221 GTCGATTACCTGACACTAATGACCGCTGAAAAGGCCGATCGCAACGACCTTGCTTACGGC 33280 || ||||| | || || |||| |||| || || || |||||||| |||| ||||| Sbjct 4145 GTGGATTATTTAACGCTGATGAAAGCTGGCAAAGCAGACCGCAACGATATTGCCTACGGT 4086 Query 33281 ATGATCACCAAAGGACTGAAGAACCTTGCCAAAGAGCTTGAT--TGCGTTGTTGTGCTTC 33338 ||||||||||| || ||| | || || |||||||||||| | || || | | | | Sbjct 4085 GAAATCACCAAAGGCCTCAAGCAGCTAGCAAAAGAGCTTGATACTACGGTGGTAT--TAC 4028 Query 33339 TGACGCAGCTTAACCGCGCATTGGAAAGCAGAACCAATAAACGCCCATTACCAAGTGACT 33398 | || ||||| |||||| | | ||| |||||||| || || || | ||||| || Sbjct 4027 TAACACAGCTAAACCGCAAACTTGAAGATAGAACCAACAAGCGACCTATGCCAAGCGATA 3968 Query 33399 CACGAGATACAGGGCAGATTGAACAGGATTGCGATTATTGGGTGGGGAT 33447 || ||||| || || || || |||||||||||||| ||| ||||||| Sbjct 3967 GCCGTGATACGGGTCAAATCGAGCAGGATTGCGATTACTGGATGGGGAT 3919 Score = 105 bits (116), Expect = 2e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27444 CGATCGCGCACTGTCTTGCGGTTGGCATCAATTAGCTTTGGAATTTCCTTCAGTTCAGCA 27503 || || ||||| || || ||||| || ||||||||||| ||||| || | || || Sbjct 9541 CGCTCTCGCACAGTTCGTCGATTGGCGTCGATTAGCTTTGGTATTTCTTTTAACTCTGCT 9482 Query 27504 ACAAGGTCTTTGCCAAGACCATCGAGATATGTTTTCGTCTGCGCAACTTTATACGCCAGA 27563 || | |||||| || || ||||| || || ||||| | || || ||||| || |||| Sbjct 9481 ACTAAGTCTTTACCGAGCCCATCAAGGTAAGTTTTTGATTGAGCGACTTTGTAGGCCAAT 9422 Query 27564 GAAGCGATCTCCTTTCTGCCCTTTGCCGTTGTGATATCAGGCACAAAGGACATAACTTCA 27623 ||||| || ||||| | || || | || |||| |||||| | ||| || ||||||| Sbjct 9421 GAAGCAATTTCCTTGCGACCTTTAACAGTGGTGACATCAGGAATAAAAGAATTAACTTCT 9362 Query 27624 CGTTCAACCTTTTGAAGGATTTCTTC 27649 | || || || ||| ||| ||||| Sbjct 9361 TGCTCTACTTTACGAATGATATCTTC 9336 >seq2680 Length=520 Score = 104 bits (114), Expect = 6e-18 Identities = 216/322 (67%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 16279 ACCCGGATAAATATGCCCGTATCGATACCGGAGCCATCATTGACCAACGGCCGGTGAGCG 16338 ||||||||||||| |||| |||||| ||||| | |||||| |||||||| | | Sbjct 453 ACCCGGATAAATACGCCCATATCGACACCGGTATCCGCATTGATGAACGGCCGATTTCGG 394 Query 16339 TGATCCCGCCGGGCAACCAGTCGCCGCCTGCGAATATCGTGATCAGCTCGTTTTCCGTGG 16398 | ||||| ||||| ||||| ||||| || | ||||||||| ||| |||| Sbjct 393 TTATCCCACCGGGAGTACAGTCACCGCCGAAAAACGTGGTGATCAGCAGTAGTTCGGTGG 334 Query 16399 TTCAGCAAAATATCAGCGTCGAAACGATGCGCGTGAGCTGGGACCAGGCGCAGAACGCTA 16458 | || || || | || || ||| ||||||||| || | || | |||| Sbjct 333 TGCATCAGGGAATTGCCATCACCACCTTGCAGGTGAGCTGGTCGGCGGTGGAGCAGGCTA 274 Query 16459 TCGCCTATGAAGCACAATGGCGCCGCAACGACGGGAACTGGGTTAACGTGCCGCGCACCT 16518 | || |||||||| | ||||| || | | || |||||| | || ||||| ||| Sbjct 273 TTGCTTATGAAGCTGAGTGGCGGCGGGATAATGGCAACTGGATAGCCGCCCCGCGAACCG 214 Query 16519 CCACCACGTCATTCGACGTCCCGGGGATTTATGCCGGGCGCTACCTGGTGCGCGTGCGCG 16578 |||| || || || || ||| || || ||||| ||||| | || || ||||| | Sbjct 213 CCACACCGGGTTTTGAGGTGCCGAATATCTACGCCGGACGCTATCAGGCTCGGGTGCGGG 154 Query 16579 CAATCAATGCCGCAGAAATTTC 16600 | || || ||||| || ||||| Sbjct 153 CGATTAACGCCGCTGAGATTTC 132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132763484560320