Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_019721.1 Length=40029 Score E Sequences producing significant alignments: (Bits) Value seq348 95.1 3e-15 seq2680 89.7 1e-13 >seq348 Length=55286 Score = 95.1 bits (104), Expect = 3e-15 Identities = 152/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 4444 TTTACCAATAACGCCGACGTGGTGGCCGAGAAAGCG------CTGAAGCCCGAATCGGAT 4497 || ||||| ||||| ||||||||||||||||| || | |||||| || || ||| Sbjct 20319 TTCACCAACAACGCGGACGTGGTGGCCGAGAACCCGACCAATCCGAAGCCGGAGTCCGAT 20260 Query 4498 ATCACCTTCAGTAAGCAAACCGCGAACGTGAAGACGATCGCCCACTGGGTGCAGGCATCG 4557 | | ||| | | | || || | || |||||||||||| | | || || Sbjct 20259 CTGGCGTTCGAGCTGGACTCGGCCAAAATTGCCACCATCGCCCACTGGATCCGCGCGTCC 20200 Query 4558 CGTCAGGTTATGGACGATGCGCCAATGCTGCAGTCATACGTCAACAACCGCCTCATGTAC 4617 |||||| || |||||| ||||||||| | ||| ||||| ||| || |||||| Sbjct 20199 AAGCAGGTTCTGCGCGATGCCAGCATGCTGCAGGCCTACATCAACGGCCGTCTGATGTAC 20140 Query 4618 GGCCTGGCGCTGAAGGAGGAAGGTCAACTGCTGAACGGT 4656 |||||| |||||| || |||| || |||||||| ||| Sbjct 20139 GGCCTGAAGCTGAAAGAAGAAGCGCAGCTGCTGAAGGGT 20101 >seq2680 Length=520 Score = 89.7 bits (98), Expect = 1e-13 Identities = 213/322 (66%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 15944 ACCCGGATAAATATGCCCGTATCGATACCGGAGCCATTATCGACCAGCGGCCGGTGAGCG 16003 ||||||||||||| |||| |||||| ||||| | || || | |||||| | | Sbjct 453 ACCCGGATAAATACGCCCATATCGACACCGGTATCCGCATTGATGAACGGCCGATTTCGG 394 Query 16004 TGATCCCGCCTGGTAACCAGTCGCCGCCTGCGAACATCGAGATCAGCTCGTTTTCCGTGG 16063 | ||||| || || ||||| ||||| ||| | | ||||||| ||| |||| Sbjct 393 TTATCCCACCGGGAGTACAGTCACCGCCGAAAAACGTGGTGATCAGCAGTAGTTCGGTGG 334 Query 16064 TTCAGCAGAATATCAGCGTCGAAACGATGCGCGTGAGCTGGGACCAGGCGCAGAACGCTA 16123 | || ||| || | || || ||| ||||||||| || | || | |||| Sbjct 333 TGCATCAGGGAATTGCCATCACCACCTTGCAGGTGAGCTGGTCGGCGGTGGAGCAGGCTA 274 Query 16124 TCGCCTATGAAGCGCAGTGGCGCCGCAACGACGGGAACTGGGTTAACGTGCCGCGCAGCT 16183 | || |||||||| ||||||| || | | || |||||| | || ||||| | | Sbjct 273 TTGCTTATGAAGCTGAGTGGCGGCGGGATAATGGCAACTGGATAGCCGCCCCGCGAACCG 214 Query 16184 CCACAACGTCATTCGACGTCCCCGGAATTTATGCCGGGCGCTACCTGGTGCGCGTGCGCG 16243 ||||| || || || || || || || ||||| ||||| | || || ||||| | Sbjct 213 CCACACCGGGTTTTGAGGTGCCGAATATCTACGCCGGACGCTATCAGGCTCGGGTGCGGG 154 Query 16244 CAATCAATGCCGCAGAAATTTC 16265 | || || ||||| || ||||| Sbjct 153 CGATTAACGCCGCTGAGATTTC 132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127966847699488