Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_019723.1 Length=47090 Score E Sequences producing significant alignments: (Bits) Value seq2270 183 9e-42 seq2629 140 1e-28 seq2766 98.7 3e-16 >seq2270 Length=26257 Score = 183 bits (202), Expect = 9e-42 Identities = 472/710 (66%), Gaps = 28/710 (4%) Strand=Plus/Minus Query 16105 TTTAAACCGGCATACAGCAACAACATGGCCTGGTGTCTGTGGGATATGCTGACCCATCCG 16164 ||||||||||| |||| ||| ||| ||| ||| | | ||| || |||||||| | Sbjct 5165 TTTAAACCGGCCTACACCAATAACCCGGCGTGGATATTCTACGATTTGGTGACCCATACC 5106 Query 16165 CGCTACGGCATGGGGAAACGTCTTGGTGC-GGCGGATGTGGATAAATGGGCGCTGTATGT 16223 || || ||||| || || | | || || || ||| || || | || ||||||| Sbjct 5105 CGTTATGGCATCGGCAAGCTGATGGGGGCATTTGGCTGT-GACAAGTTCGCCCTGTATGC 5047 Query 16224 CATCGGCCAGTACTGCGACCAGTCAGTGCCGGACGGCTTTGGCGGCACGGAGCCGCGCAT 16283 ||| | || || || |||||| |||||||| || ||||| ||||| || || ||| | Sbjct 5046 CATTGCGCAATATTGTGACCAGCTCGTGCCGGATGGATTTGGTGGCACCGAACCCCGCTT 4987 Query 16284 CACCTGTAATGCGTACCTGACCACACAGCGTAAGGCGTGGGATGTGCTCAGCGATTTCTG 16343 ||||| ||||||||| | ||| || |||||||| |||||||||| ||||| Sbjct 4986 TACCTGCAATGCGTACATCGCCAATCAACGTAAGGCACGGGATGTGCTGGATGATTTGGC 4927 Query 16344 CTCGGCGATGCGCTGTATGCCGGTATGGAACGGGCAGACGCTGACGTTCGTGCAGGACCG 16403 ||||| | | || |||||| ||| |||||||||| | ||||| | | | |||||||| Sbjct 4926 CTCGGTGTTTCGGGGTATGCAGGTCTGGAACGGGCTGCAACTGACCTGCTTTCAGGACCG 4867 Query 16404 ACCGTCGGATAAGACGTGGACCTATAACCGCAG-TAATGTGGTGATGCCGGATGATGGCG 16462 || | ||| | ||||| | | ||| | |||||||| || ||| Sbjct 4866 GCCTGCCGATCCGGTCTGGACAT-TCACCAATGCCAATGTGGT---------CGAGGGC- 4818 Query 16463 CGCCGTTCCGCTACAGCTTCAGCGCCCTGAAGGACCGCCATAATGCCGTTGAGGTGAACT 16522 || |||||| | |||| ||| | ||| |||| | |||| |||| | Sbjct 4817 --AAATTTAACTACAGTGCCGCCGCCAAGAAAGCCCGGCATACGGTGATTGAAGTGACGT 4760 Query 16523 GGATTGACCCGAACAACGGCTGGGA-----GACGGCGACAGAGCTTGTTGAAGATACGCA 16577 || | ||||| ||||||||||| | |||| || || || || ||| ||| Sbjct 4759 GGGTCAACCCGGACAACGGCTGGAAAGAAGAACGGGAACTGA--TTCAGGATGATGCGCT 4702 Query 16578 GGCCATTGCCCGTTACGGTCGTAATGTTACGAAGATGGATGCCTTTGGCTGTACCAGCCG 16637 || ||| ||| | || | || |||| ||| || || |||||||||||||| || Sbjct 4701 GG---TTGACCGGTTGGGCCTGAACGTTAAAAAGGTGACCGCGTTTGGCTGTACCAGTCG 4645 Query 16638 GGGGCAGGCACACCGCGCCGGGCTGTGGCTGATTAAAACAGAACTGCTGGAAACGCAGAC 16697 ||||||||||||||| | ||| | |||| | ||| ||||||| ||| |||||| | | Sbjct 4644 GGGGCAGGCACACCGGGTCGGTCGGTGGATCATTGAAACAGAGAAGCTCGAAACGGATTC 4585 Query 16698 CGTGGATTTCAGCGTCGG-CGCAGAAGGGCTTCGCCATGTACCGGGCGATGTTATTGAAA 16756 ||| ||||| ||| ||| ||||| || | | ||||||||| || | || | Sbjct 4584 GGTGACGTTCAGTACCGGTCGC-GAAGGCATTAACTGCATTCCGGGCGATATTGTGGACA 4526 Query 16757 TCTGCGATGATGACTATGCCGGTATCAGCACCGGTGGTCGTGTGCTGGCG 16806 | |||| | || || | | | ||| ||| || || || |||||| Sbjct 4525 TTGCCGATAACAGCTTCGCGGCTGCCCGCATCGGCGGACGGGTACTGGCG 4476 Score = 87.8 bits (96), Expect = 5e-13 Identities = 192/285 (67%), Gaps = 2/285 (1%) Strand=Plus/Minus Query 14126 GAGATTGTGGCGCTGGTCCACAGCCACCCCGGTGGTCTGCCCTGGCTGAGTGAGGCCGAC 14185 ||||||| ||| | || |||||||| || |||| ||| ||||||| | ||| Sbjct 7023 GAGATTGAGGCCATTGTGCACAGCCATCCTAACGGTCAACCCCATCTGAGTGCCGAAGAC 6964 Query 14186 CGGCGGCTGCAGGTGCAGAGTGATTTGCCGTGGTGGCTGGTCTGCCGGGGGACGATTCAT 14245 || || | |||| | | | ||||||||||| ||||||| | | | | ||| Sbjct 6963 CGCCGACAGCAGATAAAAACCAGGCTGCCGTGGTGGTTGGTCTGTGGTGATCGGGTGCAT 6904 Query 14246 AAGTTCCGCTGTGTGCCGCATCTCACCGGGCGGCGCTTTGAGCACGGTGTGAC-GGACTG 14304 | ||||| ||||||| | | ||||| ||| ||||| || || ||| || Sbjct 6903 CAATTCCGACCGGTGCCGCGTTTATTGGGGCGCGAATTTATCCACGG-GTTACAGGATTG 6845 Query 14305 TTACACACTGTTCCGGGATGCTTATCATCTGGCGGGGATTGAGATGCCGGACTTTCATCG 14364 ||| | ||| |||||||||| || |||||||||||||||||| | || ||| || Sbjct 6844 CTACTCGCTGATCCGGGATGCCTACCATCTGGCGGGGATTGAGTTAGACGATATTCCCCG 6785 Query 14365 TGAGGATGACTGGTGGCGTAACGGCCAGAATCTCTATCTGGATAA 14409 ||| || | |||||| | || ||||| || ||||| ||||| Sbjct 6784 TGATGAAGCATGGTGGAACACGGGGCAGAACCTGTATCTCGATAA 6740 >seq2629 Length=15125 Score = 140 bits (154), Expect = 1e-28 Identities = 122/152 (80%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 41023 GATAAACTTAAGATTCGAAAACTCGCCTTAAAGCCCCGCAGTTACTGGATTAAACAAGCC 41082 |||||||| || || || | || |||| ||||||||||| |||||||||||||| Sbjct 152 GATAAACTCAAAGCCCGCAAGTTAGCAGTAAAACCCCGCAGTTATTGGATTAAACAAGCA 93 Query 41083 CAACAAGCCGTAAACGCCTTCATCAGAGAAAGAGACCGCGACTTACCATGTATCTCGTGC 41142 ||||||||||| ||||| | ||||||||||||||||| || || ||||| || || ||| Sbjct 92 CAACAAGCCGTCAACGCATATATCAGAGAAAGAGACCGTGATTTGCCATGCATATCATGC 33 Query 41143 GGAACGCTCACGTCTGCTCAGTGGGATGCCGG 41174 |||||| | ||||||||||||||||| || Sbjct 32 GGAACGTTTCAATCTGCTCAGTGGGATGCTGG 1 Score = 120 bits (132), Expect = 9e-23 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 38967 GTCGATTACCTGACACTAATGACCGCTGAAAAGGCCGATCGCAACGACCTTGCTTACGGC 39026 || ||||| | || || |||| |||| || || || |||||||| |||| ||||| Sbjct 4145 GTGGATTATTTAACGCTGATGAAAGCTGGCAAAGCAGACCGCAACGATATTGCCTACGGT 4086 Query 39027 ATGATCACCAAAGGACTGAAGAACCTTGCCAAAGAGCTTGAT--TGCGTTGTTGTGCTTC 39084 ||||||||||| || ||| | || || |||||||||||| | || || | | | | Sbjct 4085 GAAATCACCAAAGGCCTCAAGCAGCTAGCAAAAGAGCTTGATACTACGGTGGTAT--TAC 4028 Query 39085 TGACGCAGCTTAACCGCGCATTGGAAAGCAGAACCAATAAACGCCCATTACCAAGTGACT 39144 | || ||||| |||||| | | ||| |||||||| || || || | ||||| || Sbjct 4027 TAACACAGCTAAACCGCAAACTTGAAGATAGAACCAACAAGCGACCTATGCCAAGCGATA 3968 Query 39145 CACGAGATACAGGGCAGATTGAACAGGATTGCGATTATTGGGTGGGGAT 39193 || ||||| || || || || |||||||||||||| ||| ||||||| Sbjct 3967 GCCGTGATACGGGTCAAATCGAGCAGGATTGCGATTACTGGATGGGGAT 3919 >seq2766 Length=35022 Score = 98.7 bits (108), Expect = 3e-16 Identities = 90/113 (80%), Gaps = 3/113 (3%) Strand=Plus/Minus Query 8150 GGCGCGTTTATTCAGCAACTGAAAAATGGCCGGTGGCATGTCATGCAGCGTGTGGCTGGG 8209 || |||||||| ||||||||||| |||||||| |||||||||||||| || || |||| Sbjct 15012 GGTGCGTTTATCCAGCAACTGAATAATGGCCGCTGGCATGTCATGCAACG---GGTTGGG 14956 Query 8210 AAAAACCGTTACCCCATTGATGTGGTGAAAATCCCGATGGCGGTGCCGCTGAC 8262 |||| ||| || || ||||| || || ||||| ||| | || |||||| || Sbjct 14955 AAAAGCCGATATCCGATTGAAGTTGTCAAAATTCCGTTAGCAAAGCCGCTAAC 14903 Score = 82.4 bits (90), Expect = 2e-11 Identities = 127/179 (71%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 14498 AATCACGCCGCAATTTACTGCGGCGACGGCGAGC-TGCTGCACCATATTCCTGAACAACT 14556 |||||||||||||| |||| || || || | | | || ||| | || | ||||| Sbjct 8070 AATCACGCCGCAATCTACTTAGGGGAACA-GACCATTTTACATCATGTCCCGAATCAACT 8012 Query 14557 GAGCAAACGAGAGAGGTACACCGACAAATGGCAGCGACGCACACACTCCCTCTGGCGTCA 14616 |||||| |||||| || | ||| | |||||| ||| || ||||| | |||||| | Sbjct 8011 GAGCAAGCGAGAGGTTTATAACGAAAGATGGCAACGAATGACTCACTCGATTTGGCGTTA 7952 Query 14617 CCGGGCATGGCGCGCATCTGCCTTTACGGGGATTTACAACGATTTGGTCGCCGCATCGA 14675 ||| |||| |||| | |||| |||||||| ||||||||||| || || |||| Sbjct 7951 CCGAAACTGGCAACCATCCGATTTTATGGGGATTTGCAACGATTTGGCCGTCGATTCGA 7893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150561279236736