Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq2162 109 4e-18 seq2252 96.9 2e-14 seq1739 93.3 3e-13 >seq2162 Length=74254 Score = 109 bits (120), Expect = 4e-18 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||||||||| || | ||||| || ||| || | ||||| ||| | ||| Sbjct 49091 CGAAGACGGAGGACCAAGTGAAGCGTCGATTCCTTTTGGATGTTATAGTCACTCAAAGTG 49032 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | ||| ||||||||||| |||||||| || | || || ||||| || || |||||| Sbjct 49031 CGGCCATCCTCAAGTTGCTTCCCAGCAAAGATCAATCGCTGCTGATCTGGGGGGATTCCT 48972 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAG 480730 || |||||||||||||| |||||| ||| || | ||||| | | | || ||| Sbjct 48971 TCTTTGTCTTGAATCTTAGCTTTGACGTTTTCGATCGAATCAGAGCCCTCGACTTCCAA- 48913 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| || ||||| ||||| |||||||| || Sbjct 48912 TGTGATCGTTTTGCCCGTGAGGGTCTTCACGAAAATCTG 48874 Score = 95.1 bits (104), Expect = 8e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || ||||||||||| || || ||||||||||||||||| || ||||||||||| || Sbjct 48798 ATCCTCCAGTTGCTTTCCGGCGAAGATAAGACGTTGTTGATCTGGGGGAATTCCTTCTTT 48739 Query 480677 GTCTTGAATCTT 480688 |||||||||||| Sbjct 48738 GTCTTGAATCTT 48727 Score = 87.8 bits (96), Expect = 1e-11 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| | ||||| |||||||| || || || || || || ||||||||||||||||| Sbjct 49254 ATCTTCCAACTGCTTGCCAGCAAAGATCAGCCGCTGCTGGTCGGGAGGAATTCCTTCCTT 49195 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 |||||| ||||| ||| || |||||| || |||| ||||| || || Sbjct 49194 GTCTTGGATCTTAGCTTTCACGTTTTCAATGGTGTCAGAACCCTCGACCTCAAGAGTGAT 49135 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || |||||||| || || || || Sbjct 49134 CGTTTTGCCTGTCAGAGTCTTGACAAAGATCTG 49102 Score = 86.0 bits (94), Expect = 4e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| | |||||||| || || ||||||||||||||||| || |||||||||||||| Sbjct 49613 ATCTTCCAACTGCTTTCCGGCGAAGATAAGACGTTGTTGATCTGGGGGAATTCCTTCCTT 49554 Query 480677 GTCTTGAATCTT 480688 ||| || ||||| Sbjct 49553 GTCCTGGATCTT 49542 >seq2252 Length=1130325 Score = 96.9 bits (106), Expect = 2e-14 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||| ||||| || ||||| || ||| |||||| | || || || | || || Sbjct 562709 CGAAGGCGGAGAACCAGATGGAGCGTAGATTCTTTCTGGATGTTGTAGTCGGACAGGGTC 562768 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 || ||| || || |||||||| || || || | || || ||||| || || ||||| Sbjct 562769 CTTCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGATCTGGGGGGATTCCC 562828 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 || || |||||||||||| ||||| |||||| || || | | |||||| Sbjct 562829 TCTTTATCTTGAATCTTTGCCTTGACGTTTTCAATGGTGTCCGAACCCTCAACTTCAAGA 562888 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || ||||| | |||||| ||||||||||| Sbjct 562889 GTGATGGTCTTTCCGGTCAAAGTCTTCACGAAAATTTG 562926 Score = 87.8 bits (96), Expect = 1e-11 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||| ||||| || ||||| || ||| ||| || | || || || | | ||| Sbjct 563518 CGAAGGCGGAGAACCAGATGGAGCGTAGATTCCTTCTGGATGTTGTAGTCGGACAAAGTG 563577 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | ||| || || |||||||| || || || || || || || || || |||||||| Sbjct 563578 CGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATTCCC 563637 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 ||||||||||| ||||| ||||| || || || |||| | | || ||| Sbjct 563638 TCCTTGTCTTGGATCTTAGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCGACCTCGAGG 563697 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || ||||| | |||||| ||||| ||||| Sbjct 563698 GTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATTTG 563735 >seq1739 Length=92152 Score = 93.3 bits (102), Expect = 3e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 480629 CTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTT 480688 ||| || ||||| || || || ||||| ||||||||||| ||||| |||||||||||||| Sbjct 76497 CTTACCGGCAAAGATCAGGCGCTGTTGGTCAGGAGGAATGCCTTCTTTGTCTTGAATCTT 76438 Query 480689 TTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGT 480748 ||||| |||||| || ||| || | || ||||| || || || ||||| Sbjct 76437 CGCCTTGACGTTTTCAATTGTGTCACTGGCTTCGACCTCCAGGGTGATGGTCTTGCCGGT 76378 Query 480749 GAGAGTCTTAACGAAAATTTG 480769 ||| ||||| ||||| || || Sbjct 76377 GAGCGTCTTCACGAAGATCTG 76357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268056349143872