Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_020840.1 Length=38987 Score E Sequences producing significant alignments: (Bits) Value seq348 118 3e-22 >seq348 Length=55286 Score = 118 bits (130), Expect = 3e-22 Identities = 206/296 (70%), Gaps = 8/296 (3%) Strand=Plus/Plus Query 33313 AAGTCACCGGTCACGAATGCCTCAGGGCGATAGACCGTAAGGGCCAGGCGCTCCTCAGCA 33372 ||| |||| |||| || ||||| ||||| |||| || ||| ||| | |||||| ||| Sbjct 19634 AAGCCACCCTTCACAAAGGCCTCGGGGCGGAAGACGGTCAGGCCCACGTCCTCCTC-GCA 19692 Query 33373 C-GGATGGTGACCATGTTTTCCTTGAAGTTGTTGCCCGTCTCGGTGGACACCTCCACCGT 33431 |||||||||||||||| | |||||||| || || | |||| ||| | | Sbjct 19693 GAGGATGGTGACCATGTTCTTGACGAAGTTGTCGCGGTCCTGGTTGGAGACCGTGA---T 19749 Query 33432 GCTGGACTG---GCGGTCCCAGACCTGAGCGCCCATCATGAACGCCCCCAGGAGGAACTC 33488 | | | ||| |||||||||| ||||||| |||||| |||| || || ||||| || Sbjct 19750 GTTCGCCTGCTCGCGGTCCCAGCCCTGAGCACCCATCTTGAAGGCACCGGTCAGGAAGTC 19809 Query 33489 ACCCGGGTCCATCGCGGTGGAGTCGATCACCGGCAAGCCCCACAAGGTAGGCCCAGCCAG 33548 ||| | ||||| || ||| | | ||||| |||||| || ||||||| Sbjct 19810 GCCCAGATCCATGGCCTTGGTTGCCACGACCGGGCGCGCCCACAGACCGGGGACAGCCAG 19869 Query 33549 ACCGCGCGGGTTGGCCCACACATAGGCGCCCTCAGTGGTCTTGGTCAGCTCGATGG 33604 || ||||| |||| ||| |||||| ||| |||||||| | ||| ||||||| Sbjct 19870 GCCACGCGGCGTGGCGAACAGGTAGGCGTTCTCGGTGGTCTTCGACAGTTCGATGG 19925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124632561102432