Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_021190.1 Length=46150 Score E Sequences producing significant alignments: (Bits) Value seq2599 194 5e-45 seq2766 127 6e-25 seq2270 84.2 6e-12 >seq2599 Length=15424 Score = 194 bits (214), Expect = 5e-45 Identities = 247/340 (73%), Gaps = 0/340 (0%) Strand=Plus/Plus Query 36341 GAACAACCGGGAGGTCGTATGGCCGACCTGTCGAACGGGTATACCAAGGTCGCTAACGAG 36400 |||||||||| | || |||| || || || | ||||||| || || || || | Sbjct 6420 GAACAACCGGAGGTTCAGGTGGCTGATCTTTCAGATGGGTATATGAAAGTAGCCAATAAA 6479 Query 36401 ATCCAACAGCTTAAGCCTCGCCTGAGACTGTCAGGCCGGGAATGGCAATGTTTTGAGGCG 36460 || ||||| || || || || || ||| | || || ||||||||||| || |||||||| Sbjct 6480 ATACAACAACTCAAACCCCGTCTAAGATTATCGGGGCGGGAATGGCAGTGCTTTGAGGCT 6539 Query 36461 GTGATCTGGCTTACCTACGGCTGGAACAAGAAACAGGACCGCGTGACAAATACGGTTATT 36520 || || ||||| || ||||| ||||| || ||||| || | || || || || || | Sbjct 6540 GTTATTTGGCTAACTTACGGATGGAATAAAAAACAAGATAGGGTAACTAACACTGTCTTG 6599 Query 36521 GCCGAGCTTACGGGCCTGAGCGATACGCATGTATCGGACGCGCTTAAGTCTCTCGCAGAA 36580 | ||||| || || | | ||||| ||||| || || || |||| || || ||||| Sbjct 6600 TCTGAGCTGACTGGATTAGGTGATACACATGTTTCTGATGCAATTAAATCCCTTGCAGAG 6659 Query 36581 CGCAAAATCATCTTTTCACAGAAGCAGGGCATGATGAAAATCGTCGGTGTAAACACTGAC 36640 | ||||| || ||| || ||||| || | ||||||| | ||||||||||| ||||| Sbjct 6660 AGGAAAATTATTTTTAGTCATAAGCAAGGAACGATGAAATTAGTCGGTGTAAATACTGAG 6719 Query 36641 CTTTCAGCATGGATTTTAGACAAACCGGAAACGGGAAGAA 36680 ||||| | ||||||||||||||| | ||||||||| || Sbjct 6720 CTTTCTGAGTGGATTTTAGACAAAAAGAAAACGGGAAAAA 6759 >seq2766 Length=35022 Score = 127 bits (140), Expect = 6e-25 Identities = 372/568 (65%), Gaps = 15/568 (3%) Strand=Plus/Minus Query 8916 CCACAAGGCTTCGATTATCAGCGCGATGATGCGATGGGGTTGTGGACTTCCGCCGATATG 8975 ||| |||| || ||||| | || ||||||| |||| | | ||| |||| | ||||| Sbjct 14485 CCAAAAGGGTTTGATTACGATCGTGATGATGAAATGGCGCTATGGGCTTCGGTTGATATC 14426 Query 8976 AAATATTCAATCACTTACGAAATGTGAGGAAA---AC-ATGCCAACA---CCTAATCCAC 9028 | || ||| || ||||||| ||||| || ||| ||| | || |||||| Sbjct 14425 ACTTACCGAATTGAATATGAAATGTAAGGAATTTTACGATGGCAAAAGTACCAAATCCAT 14366 Query 9029 TCGCTCCTGTAAAAGGTGCCGGTACCACGCTCTGGCTGTACACCGGAACGGGTAACGCTT 9088 | | || |||||| || || || || || ||| | || || ||||| | | || | Sbjct 14365 TAGAACCCACAAAAGGGGCTGGCACGACACTTTGGGTTTATACGGGAACAGATGACCC-- 14308 Query 9089 TCGCCAA----CCCACTCTCTGATATCGACTGGAATCGCCTGGCGAAAATCAAAGAACTC 9144 | | || || ||| ||| | | | | ||| | || | ||| ||| ||| Sbjct 14307 -CACTAAGGATCCGTATCT-TGAAACGGGTTTTACTCGATTAGCCAGAATTAAATCACTA 14250 Query 9145 ACGCCGGGCGAAATGACCGCAGAATCGTATGACGACACCTACCTCGACGACGAGGACGCC 9204 ||| || ||||| || || | | | || || | ||| ||||| ||| ||| Sbjct 14249 GAGCCAGGGGAAATTACTGCGGCAAGTGAAGATGATAGCTATCTCGATGACCCTAACGGT 14190 Query 9205 GACTGGAACGCGACCGCTCAGGGGGCAAAATCTGCTGGCGACACCTCTTTCACCCTCGCC 9264 |||||| | ||| ||||||| | |||||| | || || ||| | ||||||| || Sbjct 14189 GACTGGGAAAACACCACTCAGGGCGAAAAATCCTCGGGTGAAACCAGTGTCACCCTTGCA 14130 Query 9265 TGGAAGCCGGGTGAAGAAGGGCAAAAAGACCTGGTCGCATGGTTTATTGATGGCTCAGTA 9324 ||| ||| ||||||||||||||||||||||| || ||||||| ||| ||| | Sbjct 14129 TGGTTGCCTGGTGAAGAAGGGCAAAAAGACCTTGTTAAATGGTTTGATGAAGGCCTCCCA 14070 Query 9325 CGCTATTACAAAATCAAATATCCGAATGGTACCGTCGACGTTTTCCGCGGTTGGTGCAGC 9384 |||| |||||||||| || || ||||| || | || | || || ||| ||| Sbjct 14069 CGCTTTTACAAAATCCTGTACCCAAATGGCACGCTTGATTTATTTAAGGGCTGGATTAGC 14010 Query 9385 AGCCTGGGTAAAGCCATCCCGGCAAAAGAGGTTATTACCCGCACAGCGAAAATCACCAAC 9444 |||| |||||| |||| || ||||| || ||||| |||| ||| || | ||| Sbjct 14009 GGCCTAGGTAAATCCATTCCAATCAAAGAAACCATGACCCGAACAGTGAAGATTAAGAAC 13950 Query 9445 ACCGGCAAGCCGGAGCTGGCTGAAGAAA 9472 || |||| || |||| ||||||| Sbjct 13949 ACTGGCAGACCAACCATGGCAGAAGAAA 13922 Score = 120 bits (132), Expect = 9e-23 Identities = 132/176 (75%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 42915 ACCCGCGCCGCGCTTTACTCCTTCACCTATAACGTTGGCTCTGGTGCTTTTGCCAGCTCG 42974 ||||||||||| |||| ||||| | || ||||| ||| | ||||||||||| | || Sbjct 26205 ACCCGCGCCGCTATTTATTCCTTTGCTTACAACGTAGGCACAGGTGCTTTTGCTCGTTCT 26146 Query 42975 ACGCTGCTGAAGAAGCTGAACTCCGGTGATGTTCCGGGTGCGTGTAAAGAACTGCAGCGC 43034 ||| |||||||||| ||||| | |||||| | | ||||| || || ||| | | ||| Sbjct 26145 ACGATGCTGAAGAAACTGAATGCAGGTGATATCGCTGGTGCTTGCAATGAATTAAAACGC 26086 Query 43035 TGGACTTATGCTGGCGGCAAGCAGTGGAAGGGGCTGATCACCCGGCGCGAGATTGA 43090 ||||||||||| || || || ||||||| || || || || || | ||||| || Sbjct 26085 TGGACTTATGCAGGGGGTAAAGAGTGGAAAGGCCTAATAACACGCAGAGAGATAGA 26030 >seq2270 Length=26257 Score = 84.2 bits (92), Expect = 6e-12 Identities = 170/249 (68%), Gaps = 4/249 (2%) Strand=Plus/Minus Query 17504 AGGTTCCGGATAATTACGATCCGATAACCCGAACCTATTCTGGCTCATGGTCCGGCGGGT 17563 |||| ||||| ||||||||||| |||||| |||| || ||| | || | | Sbjct 5224 AGGTGCCGGACAATTACGATCCAGCAACCCGTGACTATAAAGGGGTCTGGACAGGGCGTT 5165 Query 17564 TCAAAATGGCCTGGTCCAATAACCCCGCCTGGATATTTTACGATCTGGTTCTGGATGAAA 17623 | ||| ||||| |||||||||| || |||||||| |||||| |||| || Sbjct 5164 TTAAACCGGCCTACACCAATAACCCGGCGTGGATATTCTACGATTTGGTGACCCATACCC 5105 Query 17624 TTTACGGCATGGGCACGCGCGTGGATGCGTCCATGG-TG-GATAAGTGGGCTCTGTATTC 17681 ||| ||||| |||| || ||| || | ||| || || |||| || |||||| | Sbjct 5104 GTTATGGCATCGGCAAGCTGATGGGGGCAT--TTGGCTGTGACAAGTTCGCCCTGTATGC 5047 Query 17682 AATCGCCCAGTACTGTGACGAAATGGTTTCCGACGGGGCCGGTGGCACCGAACCGCGTTT 17741 || || || || |||||| | | || | || || |||||||||||||| || || Sbjct 5046 CATTGCGCAATATTGTGACCAGCTCGTGCCGGATGGATTTGGTGGCACCGAACCCCGCTT 4987 Query 17742 CACCTGCAA 17750 |||||||| Sbjct 4986 TACCTGCAA 4978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147553381538816