Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq2252 107 3e-18 >seq2252 Length=1130325 Score = 107 bits (118), Expect = 3e-18 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||| | | || || |||||||| | |||| ||||| || || Sbjct 562694 ATTTGCATTCCACCGCGAAGGCGGAGAACCAGATGGAGCGTAGATTCTTTCTGGATGTTG 562753 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||||| | || || ||| || | || |||||||| || || || | ||| ||| Sbjct 562754 TAGTCGGACAGGGTCCTTCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGA 562813 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || ||||| ||||||||||| || || | || | ||| ||| || || ||| Sbjct 562814 TCTGGGGGGATTCCCTCTTTATCTTGAATCTTTGCCTTGACGTTTTCAATGGTGTCCGAA 562873 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||||||| ||||| || || || || || | || || || || ||||||||| Sbjct 562874 CCCTCAACTTCAAGAGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAAATTTGCATT 562930 Score = 96.9 bits (106), Expect = 6e-15 Identities = 163/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | ||||| || ||||| | || | || || || || Sbjct 563150 ATTTGCATACCACCACGGAGACGAAGGACGAGATGAAGGGTCGATTCCTTCTGGATGTTG 563209 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||||| || || | ||| || || || |||||||| || || || | ||| || Sbjct 563210 TAGTCGGACAAAGTGCGGCCATCTTCCAACTGCTTTCCGGCGAAGATCAAGCGCTGCTGG 563269 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || ||||||||||||||||| || |||| || | ||| |||||||| || Sbjct 563270 TCTGGGGGAATTCCTTCTTTATCTTGGATCTTGGCCTTCACGTTTTCGATAGTATCAGAT 563329 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || || || || || || || || || | || || || || |||||||| Sbjct 563330 CCCTCGACCTCCAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATTTGCAT 563385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899622192372480