Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2252 107 3e-18 >seq2252 Length=1130325 Score = 107 bits (118), Expect = 3e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || ||||| ||||| || || || | || ||||| | ||| Sbjct 563385 ATGCAAATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTGGAGGTCGAGGGATCT 563326 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||||||| || || |||||||||||||| || || ||||| || Sbjct 563325 GATACTATCGAAAACGTGAAGGCCAAGATCCAAGATAAAGAAGGAATTCCCCCAGACCAG 563266 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||| | ||||| |||||| | |||||| | | ||||| || || || || Sbjct 563265 CAGCGCTTGATCTTCGCCGGAAAGCAGTTGGAAGATGGCCGCACTTTGTCCGACTACAAC 563206 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || || || |||| |||||| Sbjct 563205 ATCCAGAAGGAATCGACCCTTCAT 563182 Score = 91.5 bits (100), Expect = 2e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | || || ||||| ||||| || || || | ||||| || | ||| Sbjct 562930 AATGCAAATTTTCGTGAAGACTTTGACCGGAAAGACCATCACTCTTGAAGTTGAGGGTTC 562871 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| |||||| || || || ||||||||||| || || || ||||| || Sbjct 562870 GGACACCATTGAAAACGTCAAGGCAAAGATTCAAGATAAAGAGGGAATCCCCCCAGATCA 562811 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || | ||||| | ||||| ||||||||||| ||| || || | || || || || Sbjct 562810 GCAGCGCTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGAAGGACCCTGTCCGACTACAA 562751 Query 156002 TATATCCAAAGAGGCGACGCTTCAT 156026 || ||||| | ||||| ||| Sbjct 562750 CATCCAGAAAGAATCTACGCTCCAT 562726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731845798982400