Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq2162 96.9 7e-15 >seq2162 Length=74254 Score = 96.9 bits (106), Expect = 7e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || |||| |||||| | || || || | || | || || ||| ||||| ||| Sbjct 49100 ATCCCTCCTCGAAGACGGAGGACCAAGTGAAGCGTCGATTCCTTTTGGATGTTATAGTCA 49041 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || |||| || | ||| || ||||||||||| |||| ||| ||||| || Sbjct 49040 CTCAAAGTGCGGCCATCCTCAAGTTGCTTCCCAGCAAAGATCAATCGCTGCTGATCTGGG 48981 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| ||||| || ||| ||| || || || ||||| || || Sbjct 48980 GGGATTCCTTCTTTGTCTTGAATCTTAGCTTTGACGTTTTCGATCGAATCAGAGCCCTCG 48921 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | || || ||||| || || | || || | || ||||||||| Sbjct 48920 ACTTCCAATGTGATCGTTTTGCCCGTGAGGGTCTTCACGAAAATCTGCATT 48870 Score = 89.7 bits (98), Expect = 1e-12 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| ||||| || || || || |||| |||| ||| || || || ||||| | | Sbjct 48825 GATGTTATAGTCGCTCAAGGTGCGGCCATCCTCCAGTTGCTTTCCGGCGAAGATAAGACG 48766 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 |||||||| || || ||||||||||| ||||| || ||| ||| || || || || Sbjct 48765 TTGTTGATCTGGGGGAATTCCTTCTTTGTCTTGAATCTTAGCTTTCACGTTCTCGATGGA 48706 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || || ||| || || ||||| ||||| || || || || ||||| | || ||||| Sbjct 48705 GTCAGATCCTTCAACCTCGAGAGTGATGGTCTTTCCTGTCAACGTTTTCACGAAGATCTG 48646 Query 192534 CATT 192537 |||| Sbjct 48645 CATT 48642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984443874506400