Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_021534.1 Length=47552 Score E Sequences producing significant alignments: (Bits) Value seq1458 141 3e-29 seq2629 96.9 1e-15 seq2599 96.9 1e-15 >seq1458 Length=11418 Score = 141 bits (156), Expect = 3e-29 Identities = 210/298 (70%), Gaps = 0/298 (0%) Strand=Plus/Plus Query 33176 GAGGAATCAACAAAGTAATCATTTTGGGCACTCTCGGACAAGACCCGGAAGTTAAATATA 33235 |||| | |||||||| || | |||| | | | || || || ||||||||| |||| Sbjct 10865 GAGGCGTAAACAAAGTTATTTTAGTGGGTAATTTGGGGCAGGATCCGGAAGTTCGCTATA 10924 Query 33236 TGCCTTCTGGCGGCGCTGTGTGCAATCTGTCTCTGGCAACATCAGAGCAGTGGAACGATA 33295 |||| ||| || || || ||| | ||||||| || || ||| ||| |||| Sbjct 10925 TGCCGAATGGTGGAGCAGTTGCCAACATTACTCTGGCCACGTCCGAGAGCTGGCGTGATA 10984 Query 33296 AAGCAACAGGGGAAAAGAAAGAGCAGACAGAATGGCATCGCGTGGTTATCTTCGGAAAGC 33355 | ||| || || | || |||| | || |||||||| || ||||| || ||||| || | Sbjct 10985 AGCAAACCGGTGAGATGAGAGAGAAAACCGAATGGCACCGAGTGGTCATGTTCGGTAAAC 11044 Query 33356 TGGCAGAGGTGGCTGGCGAATACCTGCGCAAAGGCTCTCAGGTGTATGTAGAAGGAAAAT 33415 ||||||| || ||||| || |||||||| |||||||||||||| ||| | ||||| | Sbjct 11045 TGGCAGAAGTCGCTGGTGAGTACCTGCGTAAAGGCTCTCAGGTCTATATCGAAGGTGCTT 11104 Query 33416 TACGTACTCGCAAATGGACAGATCAAAGCGGTGTTGAAAAATACACTACTGAAATCGT 33473 | | || || |||||| ||||| || ||| || ||||| |||||| |||| Sbjct 11105 TGCAGACCCGTAAATGGCAGGATCAGAGTGGTCAGGATCGTTACACGACTGAAGTCGT 11162 >seq2629 Length=15125 Score = 96.9 bits (106), Expect = 1e-15 Identities = 223/333 (67%), Gaps = 5/333 (2%) Strand=Plus/Plus Query 33184 AACAAAGTAATCATTTTGGG-CACTCTCGGACAAGACCCGGAAGTTAAATATATGCCTTC 33242 ||||| |||||| | | || |||| | || |||||||| ||| || ||| ||||| | Sbjct 12269 AACAAGGTAATCCTCATAGGTCACT-TAGGCCAAGACCCTGAAATTCGATACATGCCAGC 12327 Query 33243 TGGCGGCGCTGTGTGCAATCTGTCTCTGGCAACATCAGAGCAGTGGAACGATAAAGCAAC 33302 || || || || ||||| | || || ||||| || |||| || ||| | | Sbjct 12328 AGGGGGAGCAGTAGCAAATCTCACACTAGCCACATCGGAATCGTGGCGTGACAAACAATC 12387 Query 33303 AGGGGAAAAGAAAGAGCAGACAGAATGGCATCGCGTGGTTATCTTCGGAAAGCTGGCAGA 33362 || |||| | ||| | || ||||||||||| ||||| || ||||| ||| | || || Sbjct 12388 GGGTGAAATGCGCGAGAAAACCGAATGGCATCGAGTGGTAATTTTCGGCAAGTTAGCTGA 12447 Query 33363 GGTGGCTGGCGAATACCTGCGCAAAGGCTCTCAGGTGTATGTAGAAGGAAAATTACGTAC 33422 || || |||||||| ||| ||||| ||||| || | ||||| | | || Sbjct 12448 AGTTGCAGGCGAATATCTGAAAAAAGGAAGCCAGGTATACATCGAAGGCTCTCTGCAAAC 12507 Query 33423 TCGCAAATGGACAGATCAAAGCGGTGTTGAAAAATACACTACTGAAATCGTCTTGCAGCC 33482 || |||||| ||| ||||||||| || |||||| || ||| | || | | Sbjct 12508 GCGTAAATGGCAAGACCAAAGCGGTCAAGACCGATACACAACGGAAGTGGTAGTAAA--- 12564 Query 33483 TATGAACGGCGTTATGCAAATGATTGGTGGTAA 33515 ||| ||| ||||||||| | |||||||| Sbjct 12565 TATCGGCGGGTCAATGCAAATGCTAGGTGGTAA 12597 >seq2599 Length=15424 Score = 96.9 bits (106), Expect = 1e-15 Identities = 171/243 (70%), Gaps = 5/243 (2%) Strand=Plus/Minus Query 33201 GGGCACTCTCGGACAAGACCCGGAAGTTAAATATATGCCTTCTGGCGGCGCTGTGTGCAA 33260 || |||| | || |||||||||||||| || || ||| ||||| || ||| Sbjct 322 GGTCACT-TAGGTCAAGACCCGGAAGTACGTTACTCACCCAATGGTGGCGCAGTCACCAA 264 Query 33261 TCTGTCTCTGGCAACATCAGA-GCAGTGGAACGATAAAGCAA-CAGGGGAAAAGAAAGAG 33318 | | | ||||| || || || ||| ||||| || || |||| |||| || || || Sbjct 263 TATCACACTGGCTACCTCTGAAGCA-TGGAAAGACAA-GCAATCAGGTGAGCTGAGGGAA 206 Query 33319 CAGACAGAATGGCATCGCGTGGTTATCTTCGGAAAGCTGGCAGAGGTGGCTGGCGAATAC 33378 | ||||||||||| || |||||| | |||||||| |||||||| || || || ||||| Sbjct 205 AAAACAGAATGGCACCGTGTGGTTCTGTTCGGAAAACTGGCAGAAGTTGCCGGTGAATAT 146 Query 33379 CTGCGCAAAGGCTCTCAGGTGTATGTAGAAGGAAAATTACGTACTCGCAAATGGACAGAT 33438 ||| | |||||| ||| | ||| | || || |||| | || ||||| ||| ||| Sbjct 145 CTGAGGAAAGGCAGCCAGATTTATATTGAGGGTCAATTGCAAACACGCAAGTGGCAAGAC 86 Query 33439 CAA 33441 ||| Sbjct 85 CAA 83 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152039628956352