Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_021857.1 Length=41475 Score E Sequences producing significant alignments: (Bits) Value seq2638 208 2e-49 seq2766 179 1e-40 >seq2638 Length=7155 Score = 208 bits (230), Expect = 2e-49 Identities = 380/546 (70%), Gaps = 14/546 (3%) Strand=Plus/Plus Query 5079 GAATTTGCCGAACAGGAAGAAATTGCCTTTACCTCAGGCGATGGCACCAAGAAGCCGAAA 5138 || ||||| || ||||| |||| || |||||| ||||| |||| || ||||| ||| Sbjct 71 GAGTTTGCTGAGCAGGAGGAAAGCGCTTTTACCCACGGCGACGGCAAGAACAAGCCAAAA 130 Query 5139 GGGTTCCTGGCGTATG--AATCCACTGATGAAACCGACAAGGTCCGGGCGATCGGCAAAC 5196 || | |||||||| | | | | | || | |||||||| || | || || | Sbjct 131 GGCCTGCTGGCGTACGGTAGTGAAGCGCTGGA--CGACAAGGATCGT-CAATGGGGTACG 187 Query 5197 TT-CAGCATATTGTATCCGGCGAAGCG-ACCGCGGTGACCGCAGACGCCATTATCAAACT 5254 || ||||| | || | | |||| |||| ||| || ||||||| ||| | ||||| Sbjct 188 TTGCAGCACCT-GTTGCTGAAAAAGCCCACCGAGGTCACGGCAGACGACATCCTGAAACT 246 Query 5255 GATTTACACGCTGCGTAAGGCACACCGCACTGGCGCGAAGTTCATGATGAACAACAACAG 5314 ||| ||||| ||||| ||| || |||||| || ||||| ||||||||||||||||| Sbjct 247 GATCTACACCCTGCGCAAGCCATACCGCAACGGGGCGAAATTCATGATGAACAACAA--- 303 Query 5315 CCTGTT-TGCCA--TCCGTCTGCTGAAAGACACCGAGGGTAACTATCTGTGGCGTCCTGG 5371 |||||| | || | || ||||||||||| |||| || || ||||||| || || Sbjct 304 CCTGTTATTTCAGGTACGCACGCTGAAAGACAGTCAGGGCAATTACCTGTGGCAGCCGGG 363 Query 5372 GCTGGAACTGGGGCAGCCATCCTCTCTGGCGGGTTACGGTATCGCTGAAAACGAGCAGAT 5431 || ||||||| ||||| || | ||| ||| ||||||||||| |||||||| ||| | Sbjct 364 TTTGCAACTGGGACAGCCCTCTGCGCTGCTGGGCTACGGTATCGCGGAAAACGAACAGTT 423 Query 5432 GCCGGATATTGCCGCGGATGCGAAAGCCATTGCATTTGGTAACTTCAAACGGGGTTACAC 5491 ||||| | | || | ||| | | | || |||||||| ||||| | ||||| Sbjct 424 TGCGGATTTGGGCGTCGGTGCCGTGCCGGTGGTGTTCGGTAACTTTAAACGTTGCTACAC 483 Query 5492 CATCGTTGACCGTATCGGTACCCGCATTCTTCGCGATCCGTACACCAATAAACCGTTTGT 5551 ||| | ||| | | ||| || || || || |||||||||||| | || |||||| | Sbjct 484 CATTTTGGACAGGCTGGGTGTACGTATGCTGCGTGATCCGTACACCCACAAGCCGTTTAT 543 Query 5552 CGGTTTTTATACCACCAAGCGCACCGGCGGCATGCTGGTCGATTCGCAGGCCATCAAACT 5611 | || || ||||||||||| || | ||||||| || | || || ||||| Sbjct 544 CCACTTCTACACCACCAAGCGGGTGGGTTCCCTGCTGGTGGACAGCAACGCGATGAAACT 603 Query 5612 GCTGAA 5617 |||||| Sbjct 604 GCTGAA 609 >seq2766 Length=35022 Score = 179 bits (198), Expect = 1e-40 Identities = 346/506 (68%), Gaps = 6/506 (1%) Strand=Plus/Minus Query 32115 AACCAGCCCATGAACTGAAGGAAGTGGGTGATCAGTGGCGCACGCCGGACAACATTTTCT 32174 |||| ||||| || | || ||| | || |||||||||| | || || ||| | | | Sbjct 32901 AACCTACCCATAAATTAAATGAAATTGGGGATCAGTGGCAATCACCTGAAAACCTCGTAT 32842 Query 32175 GGGGAATTAACACCCTGTTTGGCCCGTTTGTTCTGGATCTGTTCACTGACGGTGATAACG 32234 | || ||||| | | | |||||| || || || ||||||||||| || || || Sbjct 32841 GTGGTATTAATTCAATCTATGGCCCATTCACCCTAGACCTGTTCACTGATGGCGAAAATA 32782 Query 32235 CCAAATGTGCCGCGTAT-TACACGGCGGAAGACAACGCGCTGGCGCATGACTGGTCAGAA 32293 |||| | || | | | ||||| || ||||| |||||||| | || || ||||||| Sbjct 32781 GCAAA-GCACCCCATTTCTACACTGCTGAAGATAACGCGCTAACTCAAGATTGGTCAGCG 32723 Query 32294 CGCCTTGCGGAGCTTAAAGGTGCTGCCTTTGGTAATCCTCCATACAGCCGCGCCAGTCAG 32353 | || || |||| ||| |||||||| ||||| ||| | ||| ||| Sbjct 32722 AAGTTAAAAGAAATTGGCGGTGTTGCTTTTGGTAACCCTCCGTACT--CACGCAGTTCAT 32665 Query 32354 --CATGAGGGGCAATACATCACCGGCATGCGTTACATCATGAAACATGCCAGTGCCATGC 32411 ||||| || ||||| ||| | ||| |||| ||| ||||| || |||| Sbjct 32664 ATCATGAAAAACAGGCAATCACTGGCGTTCGTCACATTATGTCTCATGCTTCAGCAATGC 32605 Query 32412 GTGATAAGGGCGGGCGCTATGTTTTCCTGATCAAAGCTGCCACCAGCGAAGTGTGGTGGC 32471 | || || || || ||||| ||| | | ||||| || ||||| || |||||||||| Sbjct 32604 GGGAACTAGGTGGTCGATATGTATTCTTATTGAAAGCAGCAACCAGTGAGGTGTGGTGGC 32545 Query 32472 CGGAAGATGCAGATCATATTGCTTTTATTCGCGGGCGTATTGGTTTTGAACTGCCTGTCT 32531 | ||| |||||||||| || |||||| |||||||| ||||||||||| | || | Sbjct 32544 CAGAAAATGCAGATCACATCTGTTTTATCCGCGGGCGCATTGGTTTTGACGTTCCGAAGT 32485 Query 32532 GGTTTATCCCGAAAGACGAGAAGCAGGTACCGACAGGAGCTTTTTTCGCTGGTGCTATTG 32591 |||||||||| ||| || || || ||| || || || || || ||||| || || | Sbjct 32484 GGTTTATCCCCGCAGATGAAAAACAAAAACCAACTGGGGCATTCTTTGCTGGGGCAATCG 32425 Query 32592 CTGTTTTTGACAAGACCTGGAAGGGA 32617 |||||| || || |||||||| ||| Sbjct 32424 TTGTTTTCGATAAAACCTGGAATGGA 32399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132593890328416