Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1035 152 6e-31 seq1889 149 8e-30 seq1457 138 1e-26 seq1633 129 7e-24 seq266 122 1e-21 seq2139 120 4e-21 seq318 109 7e-18 seq1953 107 2e-17 seq4 95.1 1e-13 seq2452 86.0 8e-11 >seq1035 Length=96219 Score = 152 bits (168), Expect = 6e-31 Identities = 165/216 (76%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 || || ||||| | | ||| |||||||||| ||||||||| || |||| | |||||| Sbjct 79397 GCGAGCTCGCCAGGGAGGATGAGGCGCACGGAGGTCTGGATTTCCCGCGAGGAGATCGTC 79456 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 ||||||||| |||| || || || ||| ||| | ||||||| |||| | |||| Sbjct 79457 GAGCGCTTGTTGTAGTGGGCGAGGCGCGAGGCTTCGCCGGCGATGCGCTCGAAGACGTCG 79516 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 || |||||||||||||||| |||||||| ||| ||||| || ||||||||||||| Sbjct 79517 TTCACAAACGAGTTCATGATCGACATCGCCTTCGACGAGATTCCGGTGTCGGGGTGCACC 79576 Query 1254528 TGCTTGAGCACCTTGTAGATGAACGAC-GAGTACGA 1254562 ||||||||||| ||||| | | ||| ||||| || Sbjct 79577 TGCTTGAGCACGCGGTAGACGTA-GACGGAGTAAGA 79611 >seq1889 Length=309471 Score = 149 bits (164), Expect = 8e-30 Identities = 315/472 (67%), Gaps = 21/472 (4%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 || ||||||||||| ||||||| ||| | || ||||||||||| | ||||||||||| Sbjct 15162 TGATCGACGTAGCGAGCCGTGTTGTTGTACACTCGGAGCATGGGGATCAGGCCGTTGGAG 15221 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 ||||||||| ||||| | || || | |||||| | ||||||| | ||| Sbjct 15222 GTGCCGTTGGTTCCCGCAATCATGGTTCCCGAGGCGCGAATGCAGTGCGCGTTGAGTCCG 15281 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 ||||| ||||||||||||||||| | |||||||| ||| || | | ||||||| ||| Sbjct 15282 ATGCCTCCGGCCGACTTGGAGATCAAGGCGCACTGCCAGAGGGTCTTGAAGATGCCGTCG 15341 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 || ||||| | | ||| | || ||||| || | || || | || ||| Sbjct 15342 ATGGAGTCATCGTGCATTGTGAGAAGGAAGCAGGAACTCATCTGGGGCTTGCAGGTTCCG 15401 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGTG 1630365 ||||||||||| ||||||| || ||||||| | | ||||||| || |||||| Sbjct 15402 GCGTTGAAGAGGGTGGGCGATGCGTGGGTGAACCAGCGATCCGACATGAGGTTGTAGGTT 15461 Query 1630366 GCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGG---CCGATGGCG 1630422 || | ||| |||| | ||| | | | |||| || | ||| Sbjct 15462 TCG------------ATGGCAGCGTCGATGTC------CTCCTTGTGGACTCCCACGGCC 15503 Query 1630423 ACGCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAG 1630482 || ||||| ||||||| ||||| ||||| ||| |||| | ||| || ||| Sbjct 15504 ACACGCATAAGCATGTGTTGGGGACGCTCAGTGACCTTGCCGTTGATCTTCAGCAAGTAC 15563 Query 1630483 GACCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGT 1630534 ||||| || ||| | | || || |||| | || ||||||||||||| Sbjct 15564 GACCGTTCCAGGGTTTTAAACCCGAAATAGGTGTACGCGAAATCGCGGTCGT 15615 Score = 131 bits (144), Expect = 2e-24 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 || || || ||| | | ||| ||||| || | ||||||||| || || | |||||| Sbjct 178173 GCAAGCTCACCGGGGAGGATGAGGCGGACAGAGGTCTGGATTTCCCGGGACGAGATCGTC 178114 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 ||||||||| ||||||| ||||| ||| ||| | ||||||| |||| | |||| Sbjct 178113 GAGCGCTTGTTGTAGTGCGCAAGACGAGAGGCTTCGCCGGCGATGCGCTCGAAGACGTCG 178054 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 ||||| ||||||||||||| |||||| | |||| ||||| || ||| || || ||| Sbjct 178053 TTGACGAACGAGTTCATGATCGACATAGCCTTGGACGAGATTCCAGTGTCAGGATGGACC 177994 Query 1254528 TGCTTGAGCACCTTGTAGATGAACGAC-GAGTACGA 1254562 ||||||||||| ||||| | | ||| ||||| || Sbjct 177993 TGCTTGAGCACACGGTAGACGTA-GACAGAGTAGGA 177959 Score = 116 bits (128), Expect = 5e-20 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 1628140 GCCACTTCCGTGGGCGACGAAAACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTC 1628199 || ||||| ||| ||||| ||||||||||||| ||||||||||||| || | || Sbjct 14610 GCGACTTCGTCGGGAGACGAGTACTGGACGATCTCAGTGCACAGGTTGGAGCACTTGATC 14669 Query 1628200 GTACCCAGGTTCTGCTGGTTGGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGC 1628259 || ||||||||||||||||| | | ||||| ||||||||||| ||||||||| || Sbjct 14670 GTTCCCAGGTTCTGCTGGTTCGACTTGCGGTTGCAGGCGTCCTTGTAGAGCATGTAAGGA 14729 Query 1628260 GCGCCGGTCTCGATCTGCGCCGCGACGAT 1628288 | || || |||||||| | | |||||| Sbjct 14730 GTTCCAGTTTCGATCTGGGAGGTGACGAT 14758 >seq1457 Length=5722 Score = 138 bits (152), Expect = 1e-26 Identities = 148/196 (76%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| |||||| | | ||| ||||| |||| ||||||||| || || | | || Sbjct 2474 GCTTGGCCAACTCGCCGGGGAGGATGAGGCGGACGGAGGTCTGGATTTCCCGGGAGGAGA 2533 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| || || | | ||| ||| ||||||| |||| | Sbjct 2534 TGGTGGAGCGCTTGTTGTAGTGGGCGAGCCTGGAGGCTTCGACAGCGATGCGCTCGAAGA 2593 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| ||||||||||||| ||||| | |||| |||||| || |||||||| Sbjct 2594 CGTCGTTGACGAACGAGTTCATGATGGACATGGCCTTGGAGGAGATTCCGGTGTCGGGGT 2653 Query 1254523 GCACCTGCTTGAGCAC 1254538 | ||||||||||| || Sbjct 2654 GGACCTGCTTGAGGAC 2669 >seq1633 Length=74899 Score = 129 bits (142), Expect = 7e-24 Identities = 146/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| | | ||| ||||| || | ||||||||| || || | || Sbjct 1762 GCTTGGCGAGCTCTCCGGGAAGGATGAGGCGGACAGAGGTCTGGATTTCCCGGGACGAGA 1703 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| ||||||| ||||| |||||| | |||| || |||| | Sbjct 1702 TGGTCGAGCGCTTGTTGTAGTGCGCAAGACGCGAGGCCTCACCGGCGATTCGCTCGAAGA 1643 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| || ||||||||||||| |||||| | ||| |||||| || |||||||| Sbjct 1642 CGTCGTTCACGAACGAGTTCATGATCGACATGGCCTTCGAGGAGATTCCAGTGTCGGGGT 1583 Query 1254523 GCACCTGCTTGAGCAC 1254538 | |||||||||||||| Sbjct 1582 GGACCTGCTTGAGCAC 1567 >seq266 Length=548126 Score = 122 bits (134), Expect = 1e-21 Identities = 130/172 (76%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 ||| |||||| ||| ||||| || | ||||| ||| |||| ||||||| ||| | Sbjct 123631 AGAGGCGCACGGACAACATCCCGGCATGGGATAAGAAGTTCCTGAACGTCGACCAGGGAA 123572 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 |||| || ||| | ||||| || ||||||||||| || |||| | || || || | Sbjct 123571 CCCTGTTCGAGATCATCCTTGCTGCCAACTACCTGGAAATCAGCGCGCTTCTGGACAACG 123512 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCG 1592277 ||| ||| | ||||| |||||||||||||||||| |||||||| ||||||| Sbjct 123511 CGTGTAAGACCGTGGCAAACATGATCAAGGGCAAGACGCCCGAGCAGATCCG 123460 >seq2139 Length=34178 Score = 120 bits (132), Expect = 4e-21 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 || || || ||| | | ||| || || |||| ||| ||||| ||||| | | ||| ||| Sbjct 1972 GCGAGCTCTCCGGGAAGGATAAGACGGACGGAGGTTTGGATTTCGCGGGAGGAGATGGTG 2031 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 ||||||||| |||| || || || ||| || | ||||||| |||| | |||| Sbjct 2032 GAGCGCTTGTTGTAGTGGGCGAGGCGAGAGGCTTCTCCGGCGATGCGCTCGAAGACGTCG 2091 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 ||||| || || ||||||| ||||| | |||| |||||| || ||||||||| ||| Sbjct 2092 TTGACGAAGGAATTCATGATGGACATGGCCTTGGAGGAGATTCCGGTGTCGGGGTGGACC 2151 Query 1254528 TGCTTGAGCAC 1254538 ||||||||||| Sbjct 2152 TGCTTGAGCAC 2162 >seq318 Length=4676 Score = 109 bits (120), Expect = 7e-18 Identities = 156/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| || ||| | | ||| ||||| || | || ||||| || || | | || Sbjct 3767 GCTTGGCCAACTCTCCGGGGAGGATGAGGCGAACCGAAGTTTGGATTTCCCGGGAGGAGA 3826 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| ||||||| || || || ||| | ||||||| |||| | Sbjct 3827 TGGTGGAGCGCTTGTTGTAGTGCGCAAGGCGCGAAGCTTCGCCGGCGATGCGCTCGAAAA 3886 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||| || || || ||||||| ||||| | |||| |||||| || ||| || | Sbjct 3887 CATCGTTCACGAAGGAATTCATGATGGACATAGCCTTGGAGGAGATTCCAGTGTCCGGAT 3946 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 |||||||||||||||| ||| | | || |||||| || Sbjct 3947 GCACCTGCTTGAGCACACGGTACACGTACACCGAGTAGGA 3986 >seq1953 Length=45998 Score = 107 bits (118), Expect = 2e-17 Identities = 140/192 (73%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 92603 GGCGATCTGGCGCGTGAGGGCCTCCTGCACCTGGAAGCG--GTCGGAAAACATGTCGACG 92660 ||||||||| |||||| |||||| ||||| | || ||| ||| ||| ||||| Sbjct 3867 GGCGATCTGCTTCGTGAGCCGCTCCTGGACCTGAAGACGACGTCCGAA--CATCTCGACA 3924 Query 92661 ATGCGCGGGATCTTGCTCAGGCCGATGATCCTGCCCGTGGGCAGGTAGCCCACGTGGGCC 92720 || |||| || |||||| || || | ||| | ||||||| || || | ||| || Sbjct 3925 ATACGCGCGAGCTTGCTGAGCCCAAGAATCTTCTTGTTGGGCAGATATCCGATGTGCACC 3984 Query 92721 TTGCCCATAAAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCGACGTCGCGCACG 92780 ||||| || ||||| | || ||||||||||| | |||||| || |||| ||| || ||| Sbjct 3985 TTGCCAATGAAGGGGACAAGGTGGTGCTCGCAGAGGGAGAAGAACTCGATGTCCCGGACG 4044 Query 92781 ATCACCATCTCG 92792 | ||||||||| Sbjct 4045 AGGACCATCTCG 4056 >seq4 Length=195412 Score = 95.1 bits (104), Expect = 1e-13 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 ||||| ||||| |||| ||||||||| | ||| || ||||||||||| |||||| Sbjct 71357 CCTTCATCGCGGGAAATCAGTTCGTTGCTGTGAGTGAGTCCAGGCATGAGGCCTCGCTTC 71298 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 ||||||||||||||||| ||| || ||||| ||||| || || |||||||| || Sbjct 71297 TTGAGCCAAAAGATGGCAGCGAACGACCCAGAGAAGAAGATTCCTTCAACGGCGGCGAAC 71238 Query 869300 CCGAT 869304 |||| Sbjct 71237 GCGAT 71233 >seq2452 Length=259191 Score = 86.0 bits (94), Expect = 8e-11 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||||| |||||| | |||||| |||||||| | ||||||| | || |||||| Sbjct 6604 GCCGCTAACTACTTGGACATCCGTGGGCTGCTCGACGTCACGTGCAAGACCGTCGCCAAC 6545 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||| ||| | || || || ||||| ||||| || ||||||||| ||| Sbjct 6544 ATGATCAAGGGGAAGACTCCAGAAGAAATCCGTAAGACTTTCAACATCAAGAACG 6490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106904166747888