Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq2252 149 4e-31 seq2162 116 2e-21 seq1739 91.5 1e-13 >seq2252 Length=1130325 Score = 149 bits (164), Expect = 4e-31 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| |||| |||||||| ||||| ||||| ||| |||| |||| Sbjct 562946 AGAACGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCACTGAGGGTGCGGCCATCT 563005 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||||||||||||||||| || ||||||||| | || | ||||||||||| Sbjct 563006 TCCAACTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCT 563065 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | ||| ||| ||||| || | ||| || ||| Sbjct 563066 TGGATCTTAGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCGACCTCGAGGGTGATAGTC 563125 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||||||||||||| |||||||| ||||| Sbjct 563126 TTTCCCGTGAGGGTCTTGACAAAGATTTGCAT 563157 Score = 145 bits (160), Expect = 5e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| ||| |||||||| ||||| ||||| ||| |||| |||| Sbjct 563755 AGGACTAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGACCATCC 563814 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||||||||||||||| || ||||| || | || | ||||||||||| Sbjct 563815 TCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGATCGGGAGGAATGCCCTCCTTGTCC 563874 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | | || | ||| ||| ||||| || | ||| |||||| Sbjct 563875 TGGATCTTAGCCTTGACGTTTTCGATAGTGTCAGAGGCTTCGACCTCGAGGGTGATGGTC 563934 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||||||||||||||| || ||||| |||||| Sbjct 563935 TTTCCCGTGAGGGTCTTGACGAAGATTTGCATG 563967 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| |||| |||||||| ||||| ||||| || | |||| |||| Sbjct 562215 AGGACGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCC 562274 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||||||||||||||| || ||||||||| | || | |||||||| || Sbjct 562275 TCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTATCC 562334 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||| |||||| | || | || ||||||| || | ||| |||||| Sbjct 562335 TGGATCTTTGCCTTGACGTTCTCAATGGTGTCCGAACCCTCGACCTCCAGGGTGATGGTC 562394 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || | || || || ||||||||||| Sbjct 562395 TTTCCGGTCAAAGTTTTCACGAAGATCTGCAT 562426 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||| ||||| ||||| || | |||| |||| || || ||||||||||||||| Sbjct 563548 TCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAG 563607 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 ||||| || ||||||||| | || | ||||||||||| | || || |||||| Sbjct 563608 ATCAGGCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTC 563667 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | ||| ||| ||||| || | ||| ||||||||||| || | ||||| || Sbjct 563668 TCGATGGTGTCAGAGGCTTCGACCTCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACG 563727 Query 34967 AAGATCTGCAT 34977 ||||| ||||| Sbjct 563728 AAGATTTGCAT 563738 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| ||| |||||||| ||||| ||||| || | |||| |||| Sbjct 563174 AGGACGAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCT 563233 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||||||||||||||||| || ||||||||| | || | || || || || Sbjct 563234 TCCAACTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATTCCTTCTTTATCT 563293 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | | || | ||| ||||||| || | ||| |||||| Sbjct 563294 TGGATCTTGGCCTTCACGTTTTCGATAGTATCAGATCCCTCGACCTCCAGGGTGATGGTC 563353 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || | ||||| || ||||| ||||| Sbjct 563354 TTTCCGGTCAAAGTCTTCACGAAGATTTGCAT 563385 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || ||||| ||||| ||||| || ||| | | |||| || || ||||||||||||||| Sbjct 562739 TCTTTCTGGATGTTGTAGTCGGACAGGGTCCTTCCATCCTCGAGCTGCTTTCCGGCGAAG 562798 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| || ||||| ||| | || | ||||| || || | || ||| |||||| | Sbjct 562799 ATCAAGCGCTGCTGATCTGGGGGGATTCCCTCTTTATCTTGAATCTTTGCCTTGACGTTT 562858 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | || |||| || |||| || ||||||||||| || | ||||| || Sbjct 562859 TCAATGGTGTCCGAACCCTCAACTTCAAGAGTGATGGTCTTTCCGGTCAAAGTCTTCACG 562918 Query 34967 AAGATCTGCAT 34977 || || ||||| Sbjct 562919 AAAATTTGCAT 562929 >seq2162 Length=74254 Score = 116 bits (128), Expect = 2e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| || ||||| || ||||||||||| | |||| |||| Sbjct 49082 AGGACCAAGTGAAGCGTCGATTCCTTTTGGATGTTATAGTCACTCAAAGTGCGGCCATCC 49023 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| || || ||||||| ||| ||||| ||| | || | || || ||||| Sbjct 49022 TCAAGTTGCTTCCCAGCAAAGATCAATCGCTGCTGATCTGGGGGGATTCCTTCTTTGTCT 48963 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||||| | | ||||| ||| | ||||||| || | || || || Sbjct 48962 TGAATCTTAGCTTTGACGTTTTCGATCGAATCAGAGCCCTCGACTTCCAATGTGATCGTT 48903 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||||||||||||| || || |||||||| Sbjct 48902 TTGCCCGTGAGGGTCTTCACGAAAATCTGCAT 48871 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||| | ||| ||||||||| ||||||||||| | | |||| |||| Sbjct 48854 AGAACAAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCGCTCAAGGTGCGGCCATCC 48795 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||||||||||||||||||||| || ||||| || ||| | || | || || ||||| Sbjct 48794 TCCAGTTGCTTTCCGGCGAAGATAAGACGTTGTTGATCTGGGGGAATTCCTTCTTTGTCT 48735 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||| ||| | || || ||| | || || || | || |||||| Sbjct 48734 TGAATCTTAGCTTTCACGTTCTCGATGGAGTCAGATCCTTCAACCTCGAGAGTGATGGTC 48675 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || | || || || ||||||||||| Sbjct 48674 TTTCCTGTCAACGTTTTCACGAAGATCTGCAT 48643 Score = 98.7 bits (108), Expect = 6e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||||| | | || || ||||||| || |||||||| ||||| ||||| Sbjct 48643 TTCCTCCCCGAAGGCGAAGAACTAGGTGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGC 48584 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | |||| |||| || || |||||||| |||||||| |||| |||||||| | | Sbjct 48583 TCAAAGTGCGGCCATCTTCGAGCTGCTTTCCAGCGAAGATGAGTCTCTGCTGGTCAGGAG 48524 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | ||||||||||| | || || || ||| | || || || |||| | Sbjct 48523 GGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCAATGGAGTCTGAACCCTCAA 48464 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||| ||| || ||||| ||||| || ||||| || ||||| ||||| Sbjct 48463 CCTCAAGGGTGATCGTCTTGCCCGTAAGCGTCTTCACGAAGATTTGCAT 48415 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||| | ||| ||||||||| ||||| ||||| | |||| |||| Sbjct 49310 AGAACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCACTCAAAGTGCGGCCATCT 49251 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| || || |||||||| || |||||||| | || | || |||||||| Sbjct 49250 TCCAACTGCTTGCCAGCAAAGATCAGCCGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCT 49191 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||| ||| | | || | ||| ||||||| |||| || || || Sbjct 49190 TGGATCTTAGCTTTCACGTTTTCAATGGTGTCAGAACCCTCGACCTCAAGAGTGATCGTT 49131 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || ||||| |||||||||||||| Sbjct 49130 TTGCCTGTCAGAGTCTTGACAAAGATCTGCAT 49099 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| ||||| | |||| |||| |||| |||||||||||||| Sbjct 49649 CTCCTTCTGGATGTTGTAGTCACTCAAAGTGCGGCCATCTTCCAACTGCTTTCCGGCGAA 49590 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || ||||| || ||| | || | || |||||||| | || || || || | Sbjct 49589 GATAAGACGTTGTTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTCAC--A 49532 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || ||||| || | || || || | || ||||||||||| || | || || Sbjct 49531 TTCTCGATCGAATCGGATCCTTCAACCTCGAGAGTGATGGTCTTTCCGGTCAACGTTTTC 49472 Query 34964 ACAAAGATCTGCAT 34977 || ||||||||||| Sbjct 49471 ACGAAGATCTGCAT 49458 >seq1739 Length=92152 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 34834 CTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTT 34893 ||| ||||| |||||||| |||||||||||| | || | || |||||||| | ||||| Sbjct 75947 CTTACCGGCAAAGATCAGACGTTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATTTT 75888 Query 34894 TTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGT 34953 |||||| | || | || | |||||||| || | || || ||||| || || Sbjct 75887 GGCCTTGACGTTCTCAATGGTGTCGCTTGCCTCGACCTCCAGAGTGATCGTCTTGCCGGT 75828 Query 34954 GAGGGTCTTTACAAAGATCTGCATG 34978 ||| ||||| || |||||||||||| Sbjct 75827 GAGCGTCTTCACGAAGATCTGCATG 75803 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 34834 CTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTT 34893 ||| |||||||||||||| || ||||||||| | || | ||||||||||| | || || Sbjct 77047 CTTACCGGCGAAGATCAGGCGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGGATCTT 76988 Query 34894 TTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGT 34953 |||||| | || | || | |||||||| || | || || ||||| || || Sbjct 76987 GGCCTTGACGTTCTCGATGGTGTCGCTAGCCTCGACCTCCAGAGTGATCGTCTTGCCGGT 76928 Query 34954 GAGGGTCTTTACAAAGATCTGCATG 34978 || ||||| ||||||||||||||| Sbjct 76927 CAGCGTCTTGACAAAGATCTGCATG 76903 Score = 89.7 bits (98), Expect = 3e-13 Identities = 109/147 (74%), Gaps = 4/147 (3%) Strand=Plus/Minus Query 34834 CTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTT 34893 ||| ||||| ||||| || |||||||| ||| | || | || |||||||| | || || Sbjct 76221 CTTACCGGCAAAGATGAGCCGTTGCTGATCTGGAGGGATGCCTTCCTTGTCCTGGATCTT 76162 Query 34894 TTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCC 34951 ||||| || || |||| || |||| ||||| || | ||| |||||||| || Sbjct 76161 CGCCTTGAC--ATTCTCGATCGTGTCGCTGGCTTCGACCTCCAGGGTGATGGTCTTGCCG 76104 Query 34952 GTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| ||||| || |||||||||||| Sbjct 76103 GTGAGCGTCTTCACGAAGATCTGCATG 76077 Score = 86.0 bits (94), Expect = 4e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 34834 CTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTT 34893 ||| ||||| |||||||| || || ||||| | || | || || ||||| | || || Sbjct 76497 CTTACCGGCAAAGATCAGGCGCTGTTGGTCAGGAGGAATGCCTTCTTTGTCTTGAATCTT 76438 Query 34894 TTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGT 34953 |||||| | | || | ||| |||| ||||| || | ||| |||||||| || || Sbjct 76437 CGCCTTGACGTTTTCAATTGTGTCACTGGCTTCGACCTCCAGGGTGATGGTCTTGCCGGT 76378 Query 34954 GAGGGTCTTTACAAAGATCTGCATG 34978 ||| ||||| || |||||||||||| Sbjct 76377 GAGCGTCTTCACGAAGATCTGCATG 76353 Score = 82.4 bits (90), Expect = 5e-11 Identities = 107/146 (73%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 34834 CTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTT 34893 ||| ||||| |||||||| || ||||||||| | || | || |||||||| | || || Sbjct 75671 CTTACCGGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGAATCTT 75612 Query 34894 TTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCC 34951 ||||| || || || | || |||| ||||| || | ||| |||||||| || Sbjct 75611 GGCCTTGAC--ATTCTCGATTGTGTCGCTGGCTTCGACCTCCAGGGTGATGGTCTTGCCA 75554 Query 34952 GTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||| || ||||||||||| Sbjct 75553 GTCAGCGTCTTGACGAAGATCTGCAT 75528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325681431692816