Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_022747.1 Length=34145 Score E Sequences producing significant alignments: (Bits) Value seq2600 107 4e-19 >seq2600 Length=29343 Score = 107 bits (118), Expect = 4e-19 Identities = 350/540 (65%), Gaps = 8/540 (1%) Strand=Plus/Minus Query 15371 GCATCCTCAATCGTAACCACATAACGCCACTGCTTGTCTGGACACAAGCGACCGCCATCG 15430 |||||||||| ||||| ||||| ||||| || || || || || || ||||| Sbjct 20062 GCATCCTCAAGCGTAATTACATATCGCCATTGACCATCAGGGCAATCACGCCCACCATCC 20003 Query 15431 CGCAGTTCATCAAAGGTCGGGAACTCAATATTTTTCCGAGTGGTTTTATCGCCGCGCCAT 15490 |||| ||||||||| | || || |||| ||||| || || | || || |||||| Sbjct 20002 CGCAATTCATCAAACTTAGGAAATACAATTTTTTTACGCTCGGGGTCATTACCTCGCCAT 19943 Query 15491 TTTTCACCCGTCCAGAACGAGTAAGCAGGGTGCATCTTAGAAGAAGGGGTAGAAAAGTAA 15550 | ||||||||||| || | || || || || | || | | || || ||||| ||| Sbjct 19942 TCGTCACCCGTCCAAAATGGATAGGCGGGATGTGTTTTCGCACTGGGAGTGGAAAAATAA 19883 Query 15551 GTCTTACGCCACTTTTTATGCGTAGCCATCGCCGAGGCGACTTTGTTCAGCTCGTCAAAC 15610 ||| | ||||| | | ||| || ||||| || |||| |||| || | | | ||| Sbjct 19882 GTCGTTCGCCAATGGTCATGTGTTGCCATTGCAGAGGATACTTCATTAAACCTTTTAAAA 19823 Query 15611 TTGCCGATCCAGAAATACTCAT--CAATATAAACGTGGCCGTGGTAACTCTGTGCCGTTT 15668 | | ||||||||| || | ||||||||| || ||| ||| || || || | Sbjct 19822 TCAGGTACCCAGAAATATTCGTCACAATATAAA--TGCCCGCTGTAGGATTGCGCTGTAT 19765 Query 15669 TGCCGTTGGTAGAGAGATAGTGCAACTCTGCACCATTCGACAAAGTAGAAGGGTTACCCG 15728 | ||||| || | | || |||| || || ||||| ||| ||| || || | Sbjct 19764 TTTTATTGGTCGATAAAAAGCGCAATTCAGCTCCATTACTTAAACGGATAGGATTCCCTG 19705 Query 15729 TGATCTCAATGCCTAAAAACTCTTTTGCAATCGCCACAATATAGCGACGGAAAACATCAG 15788 | | | ||| ||||||| | ||||| ||||||||| || ||||| || | Sbjct 19704 TTAAGGTGACGCCGAAAAACTTCTCGGCAATATTCACAATATAAGACCGAAAAACTTCGG 19645 Query 15789 CTTGAGCGCGAGAGGCTGAGAGAAATA--TCTGGTTATCGCCCGTGAGAATCGCCTGTTC 15846 | |||| || || || | ||| | | |||| | || || | ||| | ||| Sbjct 19644 CCTGAGGTTTTGATGCGGACAAAAAGAGTTGAGGTTTT--CCAGTTAAGCACGCATCTTC 19587 Query 15847 TAACGCTTCACCTGCAAAGTAATAGGTTGCGCCAATTTGGCGAGACTTGAGAATGTTACG 15906 ||||||||| ||||| || | || || || ||||| || ||| | ||| || || Sbjct 19586 AAACGCTTCAAACGCAAAATACCAAGTAGCACCGATTTGACGGCTCTTTAAAATATTTCG 19527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109138688066976