Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq2162 134 1e-26 seq2252 114 1e-20 >seq2162 Length=74254 Score = 134 bits (148), Expect = 1e-26 Identities = 171/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGC 29618 ||||| | | ||| || ||||| |||||||| ||||| ||||| |||||||| || | | Sbjct 49097 CCTCCTCGAAGACGGAGGACCAAGTGAAGCGTCGATTCCTTTTGGATGTTATAGTCACTC 49038 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || | |||| ||| || ||||| || |||||| | ||||||| |||||||| || || Sbjct 49037 AAAG-TGCGGCCATCCTCAAGTTGCTTCCCAGCAAAGATCAATCGCTGCTGATCTGGGGG 48979 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 || || ||||||||||| ||| || | |||||| |||| | | ||||| || | Sbjct 48978 GATTCCTTCTTTGTCTTG-AATCTTAGCTTTGACGTTTTCGATCGAATCAGAGCCCTCGA 48920 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||| | || || |||||||| || | ||| || || || ||||||||| Sbjct 48919 CTTCCAATGTGATCGTTTTGCCCGTGAGGGTCTTCACGAAAATCTGCATT 48870 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAGAATCATCGAGTTG 29642 || || ||||| || || || |||||||| || | ||| |||||| ||| || ||||| Sbjct 48845 TGGAGAGTGGACTCCTTCTGGATGTTATAGTCGCTCAA-GGTGCGGCCATCCTCCAGTTG 48787 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 || || || | || | | ||| ||||| || ||||| || ||||||||||| ||| | Sbjct 48786 CTTTCCGGCGAAGATAAGACGTTGTTGATCTGGGGGAATTCCTTCTTTGTCTTG-AATCT 48728 Query 29703 TTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAG 29761 | | ||| || | || | | |||||| ||| || || ||||| || || || || | Sbjct 48727 TAGCTTTCACGTTCTCGATGGAGTCAGATCCTTCAACCTCGAGAGTGATGGTCTTTCCTG 48668 Query 29762 TTAAGGTTTTAACAAATATCTGCATT 29787 | || ||||| || || ||||||||| Sbjct 48667 TCAACGTTTTCACGAAGATCTGCATT 48642 >seq2252 Length=1130325 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || |||| ||| ||||| |||||||| || ||||| || || | | ||| | | Sbjct 562715 CGGAGAACCAGATGGAGCGTAGATTCTTTCTGGATGTTGTAGTCGGACAGGGTCCTTCCA 562774 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| || || || || | ||||| | |||||||| || || || |||||||| Sbjct 562775 TCCTCGAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGATCTGGGGGGATTCCCTCTTTA 562834 Query 29692 TCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| ||| |||| ||||| |||| | ||||| ||| || ||||||||||| || Sbjct 562835 TCTTG-AATCTTTGCCTTGACGTTTTCAATGGTGTCCGAACCCTCAACTTCAAGAGTGAT 562893 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || || || || || || || || |||||| Sbjct 562894 GGTCTTTCCGGTCAAAGTCTTCACGAAAATTTGCATT 562930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385205753923824