Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_023571.1 Length=46243 Score E Sequences producing significant alignments: (Bits) Value seq1090 86.0 2e-12 >seq1090 Length=75268 Score = 86.0 bits (94), Expect = 2e-12 Identities = 190/279 (68%), Gaps = 12/279 (4%) Strand=Plus/Minus Query 39955 TTTTATTTTTTCAGCAATTCTTTTTATAACTGGCACTGCTACGGAATTTCCGGCCTGTTT 40014 |||||||| || ||||||| || ||||| || || | || ||| || || ||||| Sbjct 9483 TTTTATTTGTTGTGCAATTCGTTCAATAACAGGTACCACAACACTATTCCCAGCTTGTTT 9424 Query 40015 GTATAAG---GCACTTGTAGATTCGTCTTCGGGAAGTTCGTAGTTTTTTGGATAACCCTG 40071 |||| ||| ||| || |||| ||| | || |||| || ||||| || Sbjct 9423 ATATAGATTAGCA-TTGCTCATA--TCTTTGGGTAATTTATAGTCAGCAGGGTAACCTTG 9367 Query 40072 AGTGTTGAAGGTTTCTCTCGGAGTCAATTTTCTTAT--TCTTTCAT--CTTTTGTCC--T 40125 | ||| ||| ||||| || || | |||||| || | ||| || |||||| | | Sbjct 9366 AAAGTTAAAGCACTCTCTTGGTGTGAGTTTTCTGATGGTGTTTGATTTCTTTTGAACGTT 9307 Query 40126 GATTAATGGAACATTATGTCCGCCTGTACCCATATTGGCCGTCAAAGTAGGGACTACGCC 40185 | ||| || || ||||| || ||||| ||||||||||| || || |||||| | | Sbjct 9306 AAGTAAGGGGACGTTATGGCCACCTGTCCCCATATTGGCTGTTAATGTAGGGCAAAGGTT 9247 Query 40186 ACTTTTGTTTTCTCTAACATATTGTCTCCGCCACTGATA 40224 | |||| || |||| ||||||| ||| ||||| || || Sbjct 9246 ATTTTTATTGGCTCTTACATATTTTCTACGCCATTGGTA 9208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147850971417440