Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_023575.1 Length=45550 Score E Sequences producing significant alignments: (Bits) Value seq2814 136 1e-27 seq1458 102 2e-17 >seq2814 Length=35408 Score = 136 bits (150), Expect = 1e-27 Identities = 405/618 (66%), Gaps = 14/618 (2%) Strand=Plus/Minus Query 1112 TCTGGTTCGTGTTCGGGAACCCCACAAGGAACACAGGTCGATTCCGGGAGTGCTGGCGTA 1171 ||||| | | ||| || ||||| ||| | |||||||| || ||||| ||||| | |||| Sbjct 19043 TCTGGATAGCGTTTGGTAACCCGACACGTAACACAGGGCGTTTCCGCGAGTGTTTCCGTA 18984 Query 1172 AGTTCCGCCATCGCTGGAAGACCAGGCAGATCGATAGTCGATCGGCCAAGATGACCAACA 1231 |||| || |||||||| || | |||||| ||||| || ||| | || |||| Sbjct 18983 AGTTTAAGCACCGCTGGAAAACTAAGCAGATTGATAGCCGTACGGTTGAAGGCACGAACA 18924 Query 1232 AAGACCTAATCAAGCAATGGGCCGCGGACTACGGCGAAGACTCCGACTTCTTCAAGGTAC 1291 |||| | || | ||||| | ||| ||||| || |||||| | || || | Sbjct 18923 AAGAACAGATTGATAAATGGATTGAAGACCGGGGCGAGGATAGCGACTTTGTTAAAGTTC 18864 Query 1292 GTGTTCGCGGTCTGTTCCCCTCGTCCTCTGATCTGCAATTCATCGGCACTGGCCTGGTCG 1351 |||| |||||| | ||||| || ||||||| |||||||| |||||| | | Sbjct 18863 GTGTGCGCGGTATCTTCCCATCAACCTCTGAAACTCAATTCATACCTACTGGCTTAACTG 18804 Query 1352 ATGCCGCAATGGCACGCGTCGTGACTGAGGCGATGGTAAGCCACGCGCCAGTTGTTATCG 1411 |||| || ||| ||| || || | || ||| ||||| ||| || | || | Sbjct 18803 ATGCAGCCATGAAGCGCACAGTAACGCAAGCCGAAGTATCACACGCACCAATTATCATAG 18744 Query 1412 GCGTTGACCCGTCGTGGTCAGGCGATGACGAATTTGCG---ATCTATATGCGGCAGGGGC 1468 |||||||||| | | || || ||||| || |||| || ||| | || || || | Sbjct 18743 GCGTTGACCCTGCATACTCCGGTGATGATGA---TGCGGTTATTTATTTACGCCAAGGAC 18687 Query 1469 TGCATAGCAA--GCTGATCGCAACTCACCAGAAGTCTGATGACGACGTTCTGATGGCTCA 1526 |||| ||||| || | | || | || || |||||| | | ||||| | Sbjct 18686 TGCACAGCAAATGCCTGTGG--ACGGGTAACAAAACTACTGACGATATCGTTATGGCAAA 18629 Query 1527 GCGTATTGCCCAGCTGGAAGACCAGTACAAGGCCGACGCGGTATTCGTCGACTTTGGCTA 1586 ||||||||| | || || ||||| |||| || || ||| ||||||||||||| Sbjct 18628 GCGTATTGCTGACTATGAGGATCAGTATCAGGCTGATGCTGTACATATCGACTTTGGCTA 18569 Query 1587 TGGCACAGGCATT--GTCAGCGCGGCTCGAGCAATGGGGCGCAACTGGACGCTTGTGCAG 1644 ||| || || ||| || | || ||| |||||| | ||| ||||||||| Sbjct 18568 TGGTACGGGTATTTATTCTG-TTGGTATGAG-TTGGGGGCGTGATTGGCAGCTTGTGCAA 18511 Query 1645 TTCGGGGGTGCCTCAAGCGATCCGGCAATGCTGAACAAGCGTGGCGAGATCTGGAACGCG 1704 ||| || || |||| || || ||||| |||||||| || || || | ||| Sbjct 18510 TTCAATGGCGCATCAACTGACCCACAAATGCAAAACAAGCGCGGTGAAATGTATAACAAT 18451 Query 1705 ATGAAGGAATGGCTCAAG 1722 | ||| |||||||||| Sbjct 18450 GTTAAGTCATGGCTCAAG 18433 >seq1458 Length=11418 Score = 102 bits (112), Expect = 2e-17 Identities = 234/344 (68%), Gaps = 15/344 (4%) Strand=Plus/Minus Query 30056 CCGCCAAACATCTGCATCTGCCCGTGCAT---GTCGACGATGATCTCTGTTGTGTAGCGG 30112 ||||| ||||| ||||| ||| || || ||| | || || || ||||| || Sbjct 11201 CCGCCTAACATTTGCATTGTACCGCCAATCGGGTTGACAACGACTTCAGTCGTGTAACGA 11142 Query 30113 TCCTGACCGTCCTGCGCCTGCCACTTTCGAGTTCTG-AGTGAACCCTCGACGTACAGTTG 30171 |||||||| ||| ||||||| || || || ||| | | ||| |||| || | || Sbjct 11141 TCCTGACCACTCTGATCCTGCCATTTACGGGT-CTGCAAAGCACCTTCGATATAGACCTG 11083 Query 30172 CTGACCCTTCTTTACG----TGCTGCCCGACGATCTCCGCCAACTTCCCGAAGAACACCA 30227 || |||| |||| | || || ||| || |||| || ||||| | |||| Sbjct 11082 A-GAGCCTT---TACGCAGGTACTCACCAGCGACTTCTGCCAGTTTACCGAACATGACCA 11027 Query 30228 CGCGGTGCCATTCGGTGCGCTC-CTGTTGCTGGCCGGTCTGCTTGTCCTTCCAGCTCTCG 30286 | |||||||||||||| ||| || | || ||||| ||||| || |||||||||| Sbjct 11026 CTCGGTGCCATTCGGTTTTCTCTCTCAT-CTCACCGGTTTGCTTATCACGCCAGCTCTCG 10968 Query 30287 CTGGTGGCGAGGGTGATGTTGGTCACCGCATTGCCGTTGGGCATATAGCGAGTTTCCGGG 30346 ||||| || || ||||||| || || || || |||||||||||| |||||| Sbjct 10967 GACGTGGCCAGAGTAATGTTGGCAACTGCTCCACCATTCGGCATATAGCGAACTTCCGGA 10908 Query 30347 TCACCACCGACGTTGCCAACCAGAATGACTTTGTTAACGCCTCT 30390 || || | || || || | ||| |||||||| |||||||| Sbjct 10907 TCCTGCCCCAAATTACCCACTAAAATAACTTTGTTTACGCCTCT 10864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145633446838016