Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_023588.1 Length=33525 Score E Sequences producing significant alignments: (Bits) Value seq348 619 3e-173 seq2606 114 3e-21 >seq348 Length=55286 Score = 619 bits (686), Expect = 3e-173 Identities = 519/636 (82%), Gaps = 0/636 (0%) Strand=Plus/Plus Query 31886 ATGTGCGGTCGATTCGTCCAACTCCCCGTCGTCGACTTCGGCCTGCGATCGCTGGTCGAC 31945 |||||||| ||||||||||| |||||||| |||||||||||| || ||||| ||| Sbjct 3942 ATGTGCGGCCGATTCGTCCAGCTCCCCGTGATCGACTTCGGCCAGCCGGGGCTGGCTGAC 4001 Query 31946 CTCGCGCCGGCGTTAGCCCAGATCCCGCCAAGCTACAATCTAGCGCCCACACAACTGGCG 32005 || || |||| | ||| |||||| ||| |||||||| || ||||| || || | || Sbjct 4002 CTTGCACCGGGCCTGGCCGAGATCCAGCCCAGCTACAACCTCGCGCCGACGCAGCGCGCA 4061 Query 32006 TCGGTGATCCTTGACCGGGGCACGGGCCGGCAGGTATCCCGGCTCGCGTGGGGCCTGTTA 32065 || | ||||| || || ||| ||||||||||| ||||||| |||||||| ||| | Sbjct 4062 TCAATAATCCTGGATCGCGGCGAAGGCCGGCAGGTCACCCGGCTAGCGTGGGGTCTGCTG 4121 Query 32066 CCGTTCTGGGCAAAGGCGAAGAATCTGCAGGGTTCCACGATCAATGCCCGCATCGAGACG 32125 ||||||||||| ||||| ||| |||||||| || || ||||| ||||| |||||||| Sbjct 4122 CCGTTCTGGGCCAAGGCAAAGGGCCTGCAGGGCTCGACCATCAACGCCCGAATCGAGACT 4181 Query 32126 GTGGCCACCAAGCCCGCCTTCCGCTCGGCGTTCAAGAAGCGCCGGTGCGTGGTCCCCATG 32185 |||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||| Sbjct 4182 GTGGCCACGAAGCCCGCCTTCCGGTCGGCGTTCAAGAAGCGCCGGTGCGTGATCCCCATG 4241 Query 32186 GCCGGCTACTACGAGTGGTCGGTCAGCCTGATAGACGAGAAGAAAGACCCTTGGTTCATC 32245 ||||| |||||||||||||||||||||| |||| |||||||||||| ||||||||| Sbjct 4242 GCCGGGTACTACGAGTGGTCGGTCAGCCCCGAGGACGGGAAGAAAGACCCGTGGTTCATC 4301 Query 32246 CACGCCACCGGGCCGCTACTGGCCGCCGGTCTGTGGGAGGACACCAGTCCGCTGCTGCCC 32305 ||||||||||| ||||| ||||||||||| ||||||||||||||||| || ||||||||| Sbjct 4302 CACGCCACCGGTCCGCTGCTGGCCGCCGGCCTGTGGGAGGACACCAGCCCCCTGCTGCCC 4361 Query 32306 GATGGCAACCTGGGCACCTTCACCATCGTCACCGGCGACAGCAGCGGGGTGTCGGCCGAT 32365 || |||||||||||||||||||||||| |||||||||| |||||||| ||||||||||| Sbjct 4362 GACGGCAACCTGGGCACCTTCACCATCATCACCGGCGATAGCAGCGGCGTGTCGGCCGAC 4421 Query 32366 ATCCACGACCGGATGCCTGTCTGGATCGACCCTGGCCAGCTCGACGCGTGGCTCACGGCT 32425 ||||||||||| ||||| || ||| | | || ||| |||| | |||| | | || Sbjct 4422 ATCCACGACCGCATGCCGGTGTGGCTGCAGGTCGGTCAGATCGATGAGTGGATGGCCGCC 4481 Query 32426 GAGCCGGAGGAAGCGATGGCGATGCTGCTGGCTTCCGAGCCGCCCGCTATGCAGGCTTAC 32485 || || || || ||||| ||||||||||| ||||||||| || ||| |||| || Sbjct 4482 AGTCCAGACGACGCAATGGCCATGCTGCTGGCCAGCGAGCCGCCGGCGATGGAGGCGTAT 4541 Query 32486 CGCGTGAGCCGGGCTGTGAACACCCCGCGCAACAAC 32521 | || |||||| | |||||||| ||||| |||||| Sbjct 4542 AGAGTCAGCCGGACGGTGAACACGCCGCGGAACAAC 4577 >seq2606 Length=3143 Score = 114 bits (126), Expect = 3e-21 Identities = 254/379 (67%), Gaps = 14/379 (4%) Strand=Plus/Plus Query 16477 GCCCTGGGCCTGCGCGCGATGATCGATGAGCAGCAGGGCTGGCACAAATCGATCTCCAAT 16536 || |||||| |||| || | ||||| || | |||||||||||| | | |||||| Sbjct 818 GCACTGGGCTTGCGTGCCAAAATCGACGAAGAAACCGGCTGGCACAAAACCCTATCCAAT 877 Query 16537 GTGGCCGTCGCCGGCGTGACCGGCATCAGCCGC-GACGTGCACTGGGACCTGCAAGATCC 16595 |||| || |||||| || || | | | || || || |||||| ||||||| | Sbjct 878 GTGGGTGTTAACGGCGTAACGGGTCT-ATCTGCTGATGTCTTCTGGGATCTGCAAGCGAC 936 Query 16596 GGCGACCGACGCTGGCCTGCTGAACGCCGCCGACATCACCACCCTCATCAACTCCAACGG 16655 | || || |||| ||||||||| ||||||| || || ||| | ||||| Sbjct 937 TGGAACTGAGGCTGATCTGCTGAACCAGAATCACATCACAACACTGATCCGCAAAAACGG 996 Query 16656 TTACAAGTTCTGGGGTTCGCGGACCTGC---AGC---------GACGACCCGCTGTTCGC 16703 || ||||||||||| || || ||| || || ||| | |||||| | Sbjct 997 TTTTCGTTTCTGGGGTTCACGCACTTGCGCTGGCTCTGCTTCTGAGGACTCACTGTTCCC 1056 Query 16704 CTTCGAGACGGCCACGCGCACCGCGCAGATCCTGGCCGACACCATTGCCGAGGCGCAGAT 16763 ||||| | ||| || ||||| ||| | ||||| |||||||| || || ||||| || Sbjct 1057 ATTCGAAAGCTACACCCGTACCGCTCAGGTACTGGCTGACACCATGGCTGACGCGCATAT 1116 Query 16764 GGTGTACATCGACAAGCCCGAGCATCCGTCGCTCATCCGCGACATGCTGGAGAGCATCAA 16823 | | |||||||| || | || ||||| | |||||||| | || ||||||| Sbjct 1117 GTGGGCAATCGACAAACCGCTGACCCCATCGCTGGTACGCGACATTATCGAAGGCATCAA 1176 Query 16824 TGCCAAGTTCCGCGAGCTG 16842 ||| |||||||| || ||| Sbjct 1177 TGCTAAGTTCCGTGAACTG 1195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107154755542816