Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_023590.1 Length=43050 Score E Sequences producing significant alignments: (Bits) Value seq2270 104 6e-18 >seq2270 Length=26257 Score = 104 bits (114), Expect = 6e-18 Identities = 193/278 (69%), Gaps = 4/278 (1%) Strand=Plus/Plus Query 35828 TTTTGTTAATTCGTTCCAACCGATGAAAGCGTATTCGTGCCCGTGGTACTTCCAATAATC 35887 ||| ||||||||||| | ||||| |||| | |||| ||||||||||| | ||| || || Sbjct 23166 TTTGGTTAATTCGTTAAAGCCGATAAAAGGGAATTCCTGCCCGTGGTAGTCCCAGTAGTC 23225 Query 35888 GTCCTCAACTTTGGCGACACGGAATAACAATTCTTCGCCTGTTTTCCAGACCCATTTTAA 35947 || | |||| | | || |||||||| ||||| || ||| ||| ||||| ||| Sbjct 23226 ATCAGCCTCTTTACCAAACCGAAATAACAACTCTTCACCCGTTGGCCATACCCAACGTAA 23285 Query 35948 TGATGAACCCGACG-CAAGGAATTCGCACCCGTCGCCGAACTGTG-GAAACCATCGTTTT 36005 | || |||||| ||| || || | || || | || | | || || || || Sbjct 23286 TTCAGATGCCGACGCCAAAAAACGCGTA-CCATC-CTTAAATAAGCGATACATACGCTTG 23343 Query 36006 GATTTAGTGATAATGTCTTCTAGGTTTTTATATTCACGGTCAAATATTACGCCACGCCAG 36065 |||| ||| || ||||| | |||||||| |||||| || || || || ||||||||| Sbjct 23344 GATTGAGTTATGATGTCCGCAAGGTTTTTGTATTCAGTATCGAAAATAACACCACGCCAG 23403 Query 36066 AACGCCCCATAACCCAGACCAACACGACGACGAAATCG 36103 || | || || |||| || ||| || ||||| || Sbjct 23404 AATGAACCGTATCCCACGCCGACATTGCGTCGAAAGCG 23441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137633718918016