Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq2162 98.7 1e-15 seq2252 95.1 1e-14 >seq2162 Length=74254 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 |||||||| | ||| | || || |||| || ||||| ||||| ||||| || || ||| Sbjct 49097 CCTCCTCGAAGACGGAGGACCAAGTGAAGCGTCGATTCCTTTTGGATGTTATAGTCACTC 49038 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| || || ||||| || |||||| |||||| || |||||||| || || Sbjct 49037 AAAGTGCGGCCATCCTCAAGTTGCTTCCCAGCAAAGATCAATCGCTGCTGATCTGGGGGG 48978 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| ||| || ||| | | ||| | || || | | || ||| Sbjct 48977 ATTCCTTCTTTGTCTTGAATCTTAGCTTTGACGTTTTCGATCGAATCAGAGCCCTCGACT 48918 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | ||| ||||| || | || || ||||| || ||||| Sbjct 48917 TCCAATGTGATCGTTTTGCCCGTGAGGGTCTTCACGAAAATCTGCAT 48871 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 |||||||| | || | ||| | || | || || || || || ||||| || |||||| Sbjct 48869 CCTCCTCGGAGGCGAAGAACAAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCGCTC 48810 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| || || ||||| || || || |||| |||||||| ||||| || || Sbjct 48809 AAGGTGCGGCCATCCTCCAGTTGCTTTCCGGCGAAGATAAGACGTTGTTGATCTGGGGGA 48750 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| ||| || ||| | | || | | ||| | ||| || Sbjct 48749 ATTCCTTCTTTGTCTTGAATCTTAGCTTTCACGTTCTCGATGGAGTCAGATCCTTCAACC 48690 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | ||||| || ||||| ||||| ||||| || ||||| Sbjct 48689 TCGAGAGTGATGGTCTTTCCTGTCAACGTTTTCACGAAGATCTGCAT 48643 >seq2252 Length=1130325 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 137202 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 137261 ||| | ||| | ||||||||||| || |||||||| ||| || || || || || Sbjct 562720 AACCAGATGGAGCGTAGATTCTTTCTGGATGTTGTAGTCGGACAGGGTCCTTCCATCCTC 562779 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321 ||| || || || || |||||| || |||||||| || || || || ||||| || Sbjct 562780 GAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGATCTGGGGGGATTCCCTCTTTATCTTG 562839 Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 ||| ||| || | | ||| | ||||| | || ||||||| ||| | ||||| Sbjct 562840 AATCTTTGCCTTGACGTTTTCAATGGTGTCCGAACCCTCAACTTCAAGAGTGATGGTCTT 562899 Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||||||| || || ||||| |||||||| Sbjct 562900 TCCGGTCAAAGTCTTCACGAAAATTTGCAT 562929 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | || | |||| ||||| || ||||| || || |||||||| ||||| Sbjct 563740 CCTCCACGGAGGCGGAGGACTAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGCTG 563799 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| || ||||| || || || || ||||||| || |||||||||||||| Sbjct 563800 AGGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGATCGGGAGGA 563859 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 ||||| || ||||| || || || | | ||| | ||||| | || ||| || Sbjct 563860 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTTTCGATAGTGTCAGAGGCTTCGACC 563919 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | ||||| || || | || || ||||| |||||||| Sbjct 563920 TCGAGGGTGATGGTCTTTCCCGTGAGGGTCTTGACGAAGATTTGCAT 563966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488526510124800