Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq2395 158 4e-33 >seq2395 Length=68704 Score = 158 bits (174), Expect = 4e-33 Identities = 542/832 (65%), Gaps = 26/832 (3%) Strand=Plus/Minus Query 188763 TAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAACA-TTGG 188821 |||| |||| || | || || |||||| |||||||| ||| | || ||||| ||| Sbjct 54999 TAATATTCTGCTAATCGGGCCGACTGGTAGTGGTAAAACTTTACTGGCAGAAACACTTGC 54940 Query 188822 CTGATATGTTACATGTACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGCTGGTT 188881 | | ||| | | |||| ||| | | || ||||||| || | | || ||||| |||| Sbjct 54939 CCGCTATCT-AGATGTGCCTTTTACCATGGCTGATGCTACGACCCTGACCGAAGCAGGTT 54881 Query 188882 ATGTAGGTGAAGATGTGGAAAACGTATTGCTTCGTTTAA----TCCAAGCAGCTGATTAC 188937 | || || ||||| || ||||| |||| || || | ||| | ||| ||| Sbjct 54880 ACGTTGGGGAAGACGTAGAAAA--TATTA--TCCAAAAACTTTTGCAAAAATGTGACTAC 54825 Query 188938 GATATCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATAAAATTGCTAGA 188997 ||| | | |||| | ||||| || || ||||| |||||| |||||||||| | | Sbjct 54824 GATGTACAGAAAGCGCAGCGTGGCATCGTTTATATTGATGAAATAGATAAAATCTCCCGT 54765 Query 188998 AAATCAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCTTTA 189057 ||||| || | | || || || || || || || || ||||| || || || || | Sbjct 54764 AAATCTGATAATCCTTCGATAACGCGTGACGTGTCGGGTGAAGGTGTCCAACAGGCGCTT 54705 Query 189058 TTAAAAATCATTGAAGGTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACACCCT 189117 |||||| | |||||||| ||||| || ||||||||||| || ||||| || || || Sbjct 54704 TTAAAACTGATTGAAGGCACAGTAGCTGCTGTTCCTCCTCAGGGGGGTCGCAAGCATCCA 54645 Query 189118 CACCAAGAAATGCTTGAAATAGATACAACTAATATCTTGTTTATTCTTGGTGGAGCGTTT 189177 || || || | ||| | | |||||| |||| || |||| ||| ||| || || ||| Sbjct 54644 CAGCAGGAGTTCCTTCAGGTTGATACATCTAAAATTCTGTTCATTTGTGGCGGGGCATTT 54585 Query 189178 GATGGTCTTGA-AAACATTATCAAGAGACGCGCTACAAAATCAACT-----TTAGGTTTT 189231 | || |||| || || || || | ||| | || ||| || |||||||| Sbjct 54584 GCCGG-GTTGAGTAAAGTTGTC-AGCCA-GCGTTTGAATGTCAGCTCTGGAATAGGTTTT 54528 Query 189232 GATGATAGTGTAGATAAAGTACAA--GAAGAAATCAAGGATGACAATAAAGTATTCCAAC 189289 || || || ||||| || ||||| ||| ||| | || | | | Sbjct 54527 AGTGCTA---CAGTTAAAGGCGAATCAGAGAAAGCAA--CTGAAGGTGAATTGCTGTCTC 54473 Query 189290 ATCTTCAACCGCAAGATATTGTTAAGTATGGTTTAATTCCAGAATTTATTGGGCGTGTAC 189349 | || ||||| ||||| | | || | || | || || ||||||||||| ||| | | Sbjct 54472 AGGTTGAACCGGAAGATTTGATCAAATTCGGGCTGATCCCTGAATTTATTGGTCGTCTGC 54413 Query 189350 CAGTAATCGCAACTCTTAACAAACTTGATCGAGATGCATTGATTAACATTTTAACTGAGC 189409 | || | ||||| || |||| || ||| || || || | ||| | |||| Sbjct 54412 CTGTTGTGGCAACACTGGGTGAACTAAATGAAGACGCTTTAATCCAGATTCTGCAAGAGC 54353 Query 189410 CGCAAAACGCTATCATTAAACAATATCAGAAATTGTTAGATATGGATGGCGTGGAATTAG 189469 | ||||||| | | ||||| |||||| || || || |||| || || || | | Sbjct 54352 CAAAAAACGCGTTGACAAAACAGTATCAGGCTTTATTTAATCTGGAAGGTGTTGAGCTGG 54293 Query 189470 AATTCCAAAAAGAAGCATTAGAATCAATTGCAGATGAAGCGATTGAACGTAATACTGGTG 189529 ||||| ||||||||| | | |||| || | |||| || | ||||| || |||| Sbjct 54292 AATTCAGAAAAGAAGCTCTGACAGCAATCGCTAAAAAAGCAATGGCGCGTAAGACAGGTG 54233 Query 189530 CTCGCGGATTACAATCCATTATTGAAAATATTATGTTAGATGTAATGTATGA 189581 |||| || | | || ||| | ||| | || | || ||| |||||| || Sbjct 54232 CTCGTGGTCTTCGCTCAATTGTGGAAGGTGTTTTATTGGATACAATGTACGA 54181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591851984847872