Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2162 150 4e-31 seq2252 138 2e-27 seq1739 109 1e-18 >seq2162 Length=74254 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||| | ||| || || ||||| || || ||||| || || || ||||| ||| Sbjct 49097 CCTCCTCGAAGACGGAGGACCAAGTGAAGCGTCGATTCCTTTTGGATGTTATAGTCACTC 49038 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | || || || ||||| || ||||||||||| | || || |||||||| || Sbjct 49037 AAAGTGCGGCCATCCTCAAGTTGCTTCCCAGCAAAGATCAATCGCTGCTGATCTGGGGGG 48978 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||| || ||||||||||| ||||| || ||||| |||| |||| || ||| Sbjct 48977 ATTCCTTCTTTGTCTTGAATCTTAGCTTTGACGTTTTCGATCGAATCAGAGCCCTCGACT 48918 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || ||||| ||||| || | ||||| || || ||||||||| Sbjct 48917 TCCAATGTGATCGTTTTGCCCGTGAGGGTCTTCACGAAAATCTGCATT 48870 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||| | || ||||| | ||| ||||| || || ||||| || || || ||| Sbjct 49325 CCTCCTCGAAGTCGGAGAACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCACTC 49266 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | || ||||| | || || ||||||||||| || | || || || ||||| Sbjct 49265 AAAGTGCGGCCATCTTCCAACTGCTTGCCAGCAAAGATCAGCCGCTGCTGGTCGGGAGGA 49206 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| ||||| ||||| ||||| || |||||||| || ||| | || || Sbjct 49205 ATTCCTTCCTTGTCTTGGATCTTAGCTTTCACGTTTTCAATGGTGTCAGAACCCTCGACC 49146 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| ||||| |||||||||| ||||| ||||| |||||||| Sbjct 49145 TCAAGAGTGATCGTTTTGCCTGTCAGAGTCTTGACAAAGATCTGCAT 49099 Score = 136 bits (150), Expect = 8e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||| | || ||||| | ||| ||||| || || ||||| || ||||| || Sbjct 48869 CCTCCTCGGAGGCGAAGAACAAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCGCTC 48810 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || || || ||||| ||||| || ||||| || | |||||||||||| || Sbjct 48809 AAGGTGCGGCCATCCTCCAGTTGCTTTCCGGCGAAGATAAGACGTTGTTGATCTGGGGGA 48750 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||| || ||||||||||| ||||| || || || || | ||| ||| || Sbjct 48749 ATTCCTTCTTTGTCTTGAATCTTAGCTTTCACGTTCTCGATGGAGTCAGATCCTTCAACC 48690 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | ||| || ||||| ||||||||||| || || || ||||||||| Sbjct 48689 TCGAGAGTGATGGTCTTTCCTGTCAACGTTTTCACGAAGATCTGCATT 48642 Score = 113 bits (124), Expect = 9e-20 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 82617 GATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCA 82676 || || ||||| || || || ||| | | | | || ||||| | || ||||| || Sbjct 49651 GACTCCTTCTGGATGTTGTAGTCACTCAAAGTGCGGCCATCTTCCAACTGCTTTCCGGCG 49592 Query 82677 AAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACA 82736 ||||| || | |||||||||||| || ||||||||||| || || ||||| || || ||| Sbjct 49591 AAGATAAGACGTTGTTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTCACA 49532 Query 82737 TTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTT 82796 || || |||| ||| ||| || || | ||| || ||||| || |||||||| || Sbjct 49531 TTCTCGATCGAATCGGATCCTTCAACCTCGAGAGTGATGGTCTTTCCGGTCAACGTTTTC 49472 Query 82797 ACAAATATCTGCATT 82811 || || ||||||||| Sbjct 49471 ACGAAGATCTGCATT 49457 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||||| ||| || || ||||| ||||| || || || || | | | | || Sbjct 48629 CGAAGAACTAGGTGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGCTCAAAGTGCGGCCA 48570 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || |||||||| ||||| ||||| || || || ||||| || || ||||| Sbjct 48569 TCTTCGAGCTGCTTTCCAGCGAAGATGAGTCTCTGCTGGTCAGGAGGGATGCCCTCCTTG 48510 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || || || ||||| | || | || || || | || ||| Sbjct 48509 TCCTGGATCTTCGCCTTCACGTTCTCAATGGAGTCTGAACCCTCAACCTCAAGGGTGATC 48450 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | |||||| || || || ||||| Sbjct 48449 GTCTTGCCCGTAAGCGTCTTCACGAAGATTTGCAT 48415 >seq2252 Length=1130325 Score = 138 bits (152), Expect = 2e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| | || || |||||||||||||| || || || || || || | || || Sbjct 562715 CGGAGAACCAGATGGAGCGTAGATTCTTTCTGGATGTTGTAGTCGGACAGGGTCCTTCCA 562774 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || ||||| || ||||| | | || |||||||| || ||||| || ||| Sbjct 562775 TCCTCGAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGATCTGGGGGGATTCCCTCTTTA 562834 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 |||||||||||||| || || |||||||| || || | || ||||| | ||| || Sbjct 562835 TCTTGAATCTTTGCCTTGACGTTTTCAATGGTGTCCGAACCCTCAACTTCAAGAGTGATG 562894 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || ||||| ||||| || || || |||||| Sbjct 562895 GTCTTTCCGGTCAAAGTCTTCACGAAAATTTGCATT 562930 >seq1739 Length=92152 Score = 109 bits (120), Expect = 1e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || |||||||| || | || || |||||||| || |||||||| ||||||||||| Sbjct 75670 TTACCGGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGAATCTTG 75611 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || ||||| || || || || | | ||| || |||| || || |||||||| ||| Sbjct 75610 GCCTTGACATTCTCGATTGTGTCGCTGGCTTCGACCTCCAGGGTGATGGTCTTGCCAGTC 75551 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | |||||| || || |||||||| Sbjct 75550 AGCGTCTTGACGAAGATCTGCAT 75528 Score = 109 bits (120), Expect = 1e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || |||||||| || | ||| ||||||||||| || |||||||| || || ||||| Sbjct 76220 TTACCGGCAAAGATGAGCCGTTGCTGATCTGGAGGGATGCCTTCCTTGTCCTGGATCTTC 76161 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || ||||| || ||||| || | | ||| || |||| || || |||||||| || Sbjct 76160 GCCTTGACATTCTCGATCGTGTCGCTGGCTTCGACCTCCAGGGTGATGGTCTTGCCGGTG 76101 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | |||||| || || |||||||| Sbjct 76100 AGCGTCTTCACGAAGATCTGCAT 76078 Score = 109 bits (120), Expect = 1e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || |||||||| || | ||||| || ||||| || ||||| || ||||||||||| Sbjct 76496 TTACCGGCAAAGATCAGGCGCTGTTGGTCAGGAGGAATGCCTTCTTTGTCTTGAATCTTC 76437 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || || |||||||| || ||| | | ||| || |||| || || |||||||| || Sbjct 76436 GCCTTGACGTTTTCAATTGTGTCACTGGCTTCGACCTCCAGGGTGATGGTCTTGCCGGTG 76377 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | |||||| || || |||||||| Sbjct 76376 AGCGTCTTCACGAAGATCTGCAT 76354 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || |||||||| || | ||| ||||||||||| || |||||||| || || ||||| Sbjct 76770 TTACCGGCAAAGATGAGGCGTTGCTGATCTGGAGGGATGCCTTCCTTGTCCTGGATCTTC 76711 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || ||||| || ||||| || | | ||| || |||| || || |||||||| || Sbjct 76710 GCCTTGACATTCTCGATCGTGTCGCTGGCTTCGACCTCCAGGGTGATGGTCTTGCCGGTG 76651 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| || || |||||||| Sbjct 76650 AGAGTCTTGACGAAAATCTGCAT 76628 Score = 100 bits (110), Expect = 6e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || |||||||| || | ||| || |||||||| || |||||||| || || || || Sbjct 75946 TTACCGGCAAAGATCAGACGTTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATTTTG 75887 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || || || ||||| || || | | || || |||| ||| ||||||||||| || Sbjct 75886 GCCTTGACGTTCTCAATGGTGTCGCTTGCCTCGACCTCCAGAGTGATCGTCTTGCCGGTG 75827 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | |||||| || || |||||||| Sbjct 75826 AGCGTCTTCACGAAGATCTGCAT 75804 Score = 100 bits (110), Expect = 6e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || || ||||| || | || || ||||| || ||||| ||||| || || ||||| Sbjct 77046 TTACCGGCGAAGATCAGGCGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGGATCTTG 76987 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || || || || || || || ||| || || |||| ||| ||||||||||| ||| Sbjct 76986 GCCTTGACGTTCTCGATGGTGTCGCTAGCCTCGACCTCCAGAGTGATCGTCTTGCCGGTC 76927 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | |||||| ||||| |||||||| Sbjct 76926 AGCGTCTTGACAAAGATCTGCAT 76904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981791171850896