Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2162 150 4e-31 seq2252 127 5e-24 >seq2162 Length=74254 Score = 150 bits (166), Expect = 4e-31 Identities = 167/220 (76%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || || ||||| |||||||||||| | || || || |||||||| Sbjct 49102 CAGATCTTTGTCAAGACTCTGACAGGCAAAACGATCACTCTTGAGGTCGAGGGTTCTGAC 49161 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| || ||||| ||||| ||||| || ||||||||| || ||| || Sbjct 49162 ACCATTGAAAACGTGAAAGC-TAAGATCCAAGACAAGGAAGGAATTCCTCCCGACCAGCA 49220 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | || ||||| || || ||||||||||||||||| | |||||| || |||||| | Sbjct 49221 GCGGCTGATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGCACTTTGAGTGACTACAACAT 49280 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 |||||| ||||| ||||| ||||||||| | |||||||| Sbjct 49281 CCAGAAGGAGTCCACTCTCCACCTTGTTCTCCGACTTCGA 49320 Score = 140 bits (154), Expect = 8e-28 Identities = 150/196 (77%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 |||||| | |||||||| || |||||| | || || ||| | |||||| | |||| Sbjct 48658 AAAACGTTGACAGGAAAGACCATCACTCTCGAGGTTGAAGGATCTGACTCCATCGAGAAC 48717 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||||||||| |||||||||||| || || ||| | |||||||| Sbjct 48718 GTGAAAGCTAA-GATTCAAGACAAAGAAGGAATTCCCCCAGATCAACAACGTCTTATCTT 48776 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||||||||| |||| ||||| | || ||| ||| || ||| ||||||| ||||| Sbjct 48777 CGCCGGAAAGCAACTGGAGGATGGCCGCACCTTGAGCGACTATAACATCCAGAAGGAGTC 48836 Query 206364 TACTCTTCACCTTGTT 206379 ||||| ||||||||| Sbjct 48837 CACTCTCCACCTTGTT 48852 Score = 111 bits (122), Expect = 4e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 |||||| | || ||||| || |||||| | || || ||| | || || | |||| Sbjct 49473 AAAACGTTGACCGGAAAGACCATCACTCTCGAGGTTGAAGGATCCGATTCGATCGAGAAT 49532 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||||||| || || ||| | ||||||||| Sbjct 49533 GTGAAGGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAACAACGTCTTATCTTC 49592 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||||||||||||||||| | |||||| || |||||| ||||||| ||||| Sbjct 49593 GCCGGAAAGCAGTTGGAAGATGGCCGCACTTTGAGTGACTACAACATCCAGAAGGAGTC 49651 Score = 102 bits (112), Expect = 2e-16 Identities = 79/94 (84%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 ||||||||| ||||| ||||| ||||||| |||||||| ||| || | ||||| || Sbjct 48852 AACAAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCGCTCAAGGTGCGGCCATCCTC 48793 Query 204823 CAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||| |||||||||||||||||||| ||||||||| Sbjct 48792 CAGTTGCTTTCCGGCGAAGATAAGACGTTGTTGA 48759 Score = 93.3 bits (102), Expect = 1e-13 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || ||||||||||| |||||||| || | ||||| | ||||| Sbjct 48886 AAGACCCTCACGGGCAAAACGATCACATTGGAAGTCGAGGGCTCTGATTCGATCGAAAAC 48945 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||||||||||| ||||||||||| || || || || | ||||| Sbjct 48946 GTCAAAGC-TAAGATTCAAGACAAAGAAGGAATCCCCCCAGATCAGCAGCGATTGATCTT 49004 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || ||||| | || ||||| | |||||| || || ||| |||| || || || Sbjct 49005 TGCTGGGAAGCAACTTGAGGATGGCCGCACTTTGAGTGACTATAACATCCAAAAGGAATC 49064 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCGA 206391 || |||||| | || | | |||||| Sbjct 49065 GACGCTTCACTTGGTCCTCCGTCTTCGA 49092 Score = 91.5 bits (100), Expect = 3e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 204779 GACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCG 204838 ||||| ||||||| || |||||| |||||| | |||||||||| ||||||||||||| Sbjct 49651 GACTCCTTCTGGATGTTGTAGTCACTCAAAGTGCGGCCATCTTCCAACTGCTTTCCGGCG 49592 Query 204839 AAGATAAGCCGTTGTTGA 204856 |||||||| ||||||||| Sbjct 49591 AAGATAAGACGTTGTTGA 49574 >seq2252 Length=1130325 Score = 127 bits (140), Expect = 5e-24 Identities = 139/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || ||||| || ||||| |||| || || | ||||| || ||||| || ||| Sbjct 563361 ACCGGAAAGACCATCACCCTGGAGGTCGAGGGATCTGATACTATCGAAAACGTGAAGGCC 563302 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| |||||||||||| || ||| || | | ||||||||||||||| Sbjct 563301 AAGATCCAAGATAAAGAAGGAATTCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGAAAG 563242 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 |||||||||||||| | |||||| |||| |||||| ||||||| || || || ||||| Sbjct 563241 CAGTTGGAAGATGGCCGCACTTTGTCCGACTACAACATCCAGAAGGAATCGACCCTTCAT 563182 Query 206374 CTTGT 206378 || || Sbjct 563181 CTCGT 563177 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || ||||| || |||||| | ||||| || |||| ||||| | ||| || ||| | Sbjct 562905 ACCGGAAAGACCATCACTCTTGAAGTTGAGGGTTCGGACACCATTGAAAACGTCAAGGCA 562846 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| ||||| ||||| || || || | | ||||||||||||||| Sbjct 562845 AAGATTCAAGATAAAGAGGGAATCCCCCCAGATCAGCAGCGCTTGATCTTCGCCGGAAAG 562786 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | || ||||||||||| || |||| |||||| |||||||||| ||||| || || Sbjct 562785 CAGCTCGAGGATGGAAGGACCCTGTCCGACTACAACATCCAGAAAGAATCTACGCTCCAT 562726 Query 206374 CTTGTTTTGAGACTTCG 206390 || ||| | | ||||| Sbjct 562725 CTGGTTCTCCGCCTTCG 562709 Score = 107 bits (118), Expect = 5e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || ||||| ||||| || ||||| | || || ||| |||||| Sbjct 563154 CAAATCTTTGTCAAGACCCTCACGGGAAAGACTATCACCCTCGAGGTCGAAGCCTCTGAC 563095 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| ||||| || || |||||| || ||| || Sbjct 563094 ACCATCGAGAACGTCAAGGCTAAGATCCAAGACAAGGAGGGAATTCCCCCAGACCAGCAG 563035 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||||||||||||||||||||||||||| | || | || |||||| || Sbjct 563034 CGCTTGATCTTCGCCGGAAAGCAGTTGGAAGATGGCCGCACCCTCAGTGACTACAACATC 562975 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||| || || || |||||||| ||| Sbjct 562974 CAGAAGGAATCCACCCTTCACCTCGTT 562948 Score = 107 bits (118), Expect = 5e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || ||||| || ||||| | || || ||| |||||||| |||| || ||| Sbjct 563714 ACCGGAAAGACCATCACCCTCGAGGTCGAAGCCTCTGACACCATCGAGAACGTCAAGGCT 563655 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || || |||||| || ||| || | || ||||||||||||||| Sbjct 563654 AAGATCCAAGACAAGGAGGGAATTCCCCCAGACCAGCAGCGCCTGATCTTCGCCGGAAAG 563595 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | || ||||| | |||||| |||| |||||| ||||||| || ||||| || || Sbjct 563594 CAGCTCGAGGATGGCCGCACTTTGTCCGACTACAACATCCAGAAGGAATCTACGCTCCAT 563535 Query 206374 CTTGTTTTGAGACTTCG 206390 || ||| | | ||||| Sbjct 563534 CTGGTTCTCCGCCTTCG 563518 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || ||||| || ||||| |||| || || |||| ||||| | || Sbjct 562411 AAAACTTTGACCGGAAAGACCATCACCCTGGAGGTCGAGGGTTCGGACACCATTGAGAAC 562352 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| || || || || || || || ||| || | || |||||| Sbjct 562351 GTCAAGGCAAAGATCCAGGATAAGGAGGGCATCCCCCCAGACCAGCAGCGCCTGATCTTC 562292 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| | || ||||| | |||||| |||| |||||| ||||||| || || Sbjct 562291 GCCGGAAAGCAGCTCGAGGATGGCCGCACTTTGTCCGACTACAACATCCAGAAGGAATCC 562232 Query 206365 ACTCTTCACCTTGT 206378 || |||||||| || Sbjct 562231 ACCCTTCACCTCGT 562218 Score = 86.0 bits (94), Expect = 1e-11 Identities = 78/97 (80%), Gaps = 1/97 (1%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | | ||| || || || ||||| |||||||||| || ||||| | || ||| Sbjct 562709 CGAAGGCGGAGAACCAGATGGAGCGTAGATTCTTTCTGGATGTTGTAGTCGGACAGGGTC 562768 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGAT-AAGC 204847 |||||||| || |||||||||||||||||||| |||| Sbjct 562769 CTTCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAGC 562805 Score = 86.0 bits (94), Expect = 1e-11 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| ||||| || ||||| | || || ||| |||||||| ||||| Sbjct 563952 CAAGACCCTCACGGGAAAGACCATCACCCTCGAGGTCGAAGCCTCTGACACTATCGAAAA 563893 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| || || || || || ||| || || || | || ||||| Sbjct 563892 CGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCTCCCGATCAGCAGCGCCTGATCTT 563833 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||||||| | || ||||| | || | ||| |||||| ||||||| || || Sbjct 563832 CGCCGGAAAGCAGCTCGAGGATGGTCGCACCCTCAGCGACTACAACATCCAGAAGGAATC 563773 Query 206364 TACTCTTCACCTTGT 206378 || ||||| || || Sbjct 563772 GACCCTTCATCTAGT 563758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181777433085744