Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1889 143 3e-29 seq2252 84.2 2e-11 >seq1889 Length=309471 Score = 143 bits (158), Expect = 3e-29 Identities = 344/513 (67%), Gaps = 7/513 (1%) Strand=Plus/Plus Query 147092 TCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGC 147151 ||||||| ||||| |||||||| || || ||| | ||| ||| || | || ||| Sbjct 14221 TCCACATCTCGTATTGGAGCACGCCGCGGCTGACCGGAGAGCCTTCGTAGGTTTCATAGG 14280 Query 147152 TTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGG 147211 ||||| ||| ||||| || ||| | |||||| | | | ||| ||||||||| Sbjct 14281 GTCCGTACAGCTCCGCCAGCTCGCAGGAAGACTCGAGGGAGGCGTGGTAGATGGTTTCGA 14340 Query 147212 CGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAA 147271 |||| | ||||| | | || ||||| || | | || | |||| |||| || Sbjct 14341 AGATTCGCTTGTTCATGTCGCGGGCTTCAGGACTGGTGAAGGGGAAGCGCATCAGCATAA 14400 Query 147272 AGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATGCTTTTCGTTGCTGCGCT 147331 |||| || || | ||||||| |||| || || || || ||| | |||| | | | Sbjct 14401 AGGCGTCCGCGAGTCCCTGGACTCCGATTCCAATGGGACGGTGCCGCTTGTTGGAG-GTT 14459 Query 147332 TCGCGCTC-GCTATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACA 147390 ||| || | | ||||| | ||||| || || |||||||||||||| || || Sbjct 14460 TCGGCTTCAGGAACAGGATAATAGTTGCCGTCGATGATCTTGTTGAGGTTGCGAGTGACG 14519 Query 147391 ACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGTCTTCGACACGTACGCAT 147450 || ||||| || | | ||| |||||| | || | ||| ||| || | | ||| || Sbjct 14520 ACCTTAGTGATCGCGTGGAGCTTCTCGTAGTCGAAGGTCTTGTCCTC--CTTG-ACGAAT 14576 Query 147451 TGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTC-GGCGTCGCTGTACTG 147509 |||||| || || || || | ||||| ||||| || || || | || |||||| Sbjct 14577 CGGTTCAACGCAATCGAAGCTAAGTTGCACACGGCGACTTCGTCGGGAGACG-AGTACTG 14635 Query 147510 CACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTT 147569 ||||| || | |||||||||| ||| || || ||||| || ||||| || || Sbjct 14636 GACGATCTCAGTGCACAGGTTGGAGCACTTGATCGTTCCCAGGTTCTGCTGGTTCGACTT 14695 Query 147570 CCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602 || ||||| ||||| ||| |||||||||| || Sbjct 14696 GCGGTTGCAGGCGTCCTTGTAGAGCATGTAAGG 14728 >seq2252 Length=1130325 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 ||| | ||||| ||| | | || ||||| || |||||||||||| || ||| | Sbjct 562714 GCGGAGAACCAGATGGAGCGTAGATTCTTTCTGGATGTTGTAGTCGGACAGGGTCCTTCC 562773 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 ||| |||||||| || |||| |||| | ||||| |||||||| || || || ||||| Sbjct 562774 ATCCTCGAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGATCTGGGGGGATTCCCTCTTT 562833 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 ||| ||| ||| || | | ||| | || || | ||| ||||| | || | Sbjct 562834 ATCTTGAATCTTTGCCTTGACGTTTTCAATGGTGTCCGAACCCTCAACTTCAAGAGTGAT 562893 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || |||| ||| || | |||||| ||||| Sbjct 562894 GGTCTTTCCGGTCAAAGTCTTCACGAAAATTTGCAT 562929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476594137319040