Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_026014.1 Length=35814 Score E Sequences producing significant alignments: (Bits) Value seq2557 187 6e-43 seq2595 114 3e-21 >seq2557 Length=24734 Score = 187 bits (206), Expect = 6e-43 Identities = 293/414 (71%), Gaps = 8/414 (2%) Strand=Plus/Minus Query 26983 ATTGGCTATGTAAGGGTATCAACAAATGACCAGAATACAGACCTGCAACGAAACGCTCTT 27042 ||||||||| | || |||||||||| ||| ||||||| || ||||| |||| || || Sbjct 21620 ATTGGCTATATCAGAGTATCAACAAGTGATCAGAATAGTGATTTGCAAAGAAATGCA-TT 21562 Query 27043 GTTTG---TGCAGGATGTGAACAAATATTTGAAGATAAATTAAGCGGGACAA-AGACAGA 27098 | | | || |||||| || |||||||| ||| | || |||| || || || | Sbjct 21561 GACCGATATTCAC--TGTGAAATGATTTTTGAAGACAAAATCAGTGGGAGAACAGCCA-A 21505 Query 27099 CCGACCGGGATTAAAACGCGCTTTAAAGCGCCTTCAAAAAGGTGACACGCTGGTTGTCTG 27158 || || ||||||||||| || ||||||| ||| || || || || ||||||||||| Sbjct 21504 TCGCCCAGGATTAAAACGTGCGTTAAAGCACCTGAAATTTGGCGATACACTGGTTGTCTG 21445 Query 27159 GAAACTGGATCGCCTCGGGCGAAGCATGAAACATCTGATTTCTCTCGTCGGGGAACTACG 27218 ||| ||||||| || ||||| || | ||| ||||| | | || | ||||| | Sbjct 21444 GAAGTTGGATCGTCTGGGGCGCAGTGTAAAAAATCTGGTGACACTAATTTCAGAACTGCA 21385 Query 27219 GGAGCGAGGGATTAATTTTCGCAGTCTGACCGACAGCATAGATACATCTTCTCCAATGGG 27278 || | || ||| |||| | || ||||| ||||| || ||||| | | | ||||| Sbjct 21384 TGAACAGGGAATTCATTTCCAGAGCCTGACGGACAGTATTGATACCAGTACCGCTATGGG 21325 Query 27279 GCGTTTTTTCTTCCACGTGATGGGTGCCCTGGCTGAAATGGAACGTGAATTAATTGTTGA 27338 ||| ||||||||||| |||||| | || ||||| ||||||||||| || || || || || Sbjct 21324 GCGGTTTTTCTTCCATGTGATGAGCGCACTGGCCGAAATGGAACGCGAGTTGATCGTCGA 21265 Query 27339 ACGTACACTGGCCGGACTGGCAGCAGCGCGCGCACGGGGGCGCACAGGCGGACG 27392 | | || || || ||||| || || || || ||| | | |||||||| Sbjct 21264 AAGAACCAATGCAGGTCTGGCTGCTGCCCGACAACAGGGAAGGATCGGCGGACG 21211 >seq2595 Length=21780 Score = 114 bits (126), Expect = 3e-21 Identities = 212/311 (68%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 26448 GCAGGTTGTTGATTTTTCGTGTTGTAGTCTCGTCGCCAGCCAGGAGCATAAGCATCACCA 26507 |||| | ||| ||| ||||| ||||| | || ||| | ||| ||||| | | ||| Sbjct 21611 GCAGATGGTTTATTCGCAGTGTTATAGTCCCTTCTCCAACTTGGAACATAATCCTTACCG 21552 Query 26508 TGATTAATATAAGTGAATTGAGCGTTAGTAATTCCGCCACCGCTGGACGTGCTCGGCGTG 26567 || || |||||| ||||||||||| | ||| | |||| | | || || | ||| Sbjct 21551 TGGTTTCCATAAGTAAATTGAGCGTTCGGAATACAGCCATCTATTGATGTAGGAGCCGTT 21492 Query 26568 GTAACGCGTATGGTCATTGCGCCGCGAGTGCCAATAACTTCCACCACAGCACCTGCAAGA 26627 ||||| || || |||||| | | | || || |||||||| |||||||| || | Sbjct 21491 GTAACACGGATCGTCATTACACTTTCAAGCCCCATGACTTCCACAACAGCACCCGCTAAG 21432 Query 26628 CAAATATTTCCGCAACCTGTATCTGTAATGACCTTATTATTTGCATAAGCCCATGAGCCT 26687 ||| || || || ||||| || || | || | ||||| | ||| || ||| Sbjct 21431 TGAATTGCACCACAGCCAGTATCAGTGATTCTTCTGTTGCTCGCATATGACCACGATCCT 21372 Query 26688 TTGCACATCCAGTAAGGATGGTTAAATGCTCCCTGACTCTCCAGCCACGAAATAAATTGC 26747 || |||||||||||||| |||||||| || | | ||| | ||||| | |||||| | Sbjct 21371 TTACACATCCAGTAAGGGTGGTTAAAAGCATCTTTACTTTTTAGCCATGCAATAAACTCT 21312 Query 26748 GCGGTTGTCCA 26758 | |||||||| Sbjct 21311 TCAGTTGTCCA 21301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114479306426368