Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1035 165 1e-34 seq1457 147 3e-29 seq2139 141 1e-27 seq1889 138 2e-26 seq1633 132 7e-25 seq2079 120 4e-21 seq318 114 2e-19 seq1953 96.9 5e-14 seq687 86.0 9e-11 >seq1035 Length=96219 Score = 165 bits (182), Expect = 1e-34 Identities = 176/231 (76%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||| ||||||||||||||||||||| |||| ||| || ||| | | Sbjct 79595 TCTACCGCGTGCTCAAGCAGGTGCACCCCGACACCGGA-----ATC-TCGTCGAAGGCGA 79542 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 |||||||||||||||||||||| |||||| | |||| ||||||| | ||| ||| | Sbjct 79541 TGTCGATCATGAACTCGTTTGTGAACGACGTCTTCGAGCGCATCGCCGGCGAAGCCTCGC 79482 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 |||| || | || |||||||||| |||||| | |||| || ||||||||| |||||| Sbjct 79481 GCCTCGCCCACTACAACAAGCGCTCGACGATCTCCTCGCGGGAAATCCAGACCTCCGTGC 79422 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| ||| | | ||||| || || | |||||||||||||||||| |||| Sbjct 79421 GCCTCATCCTCCCTGGCGAGCTCGCGAAGCACGCCGTCTCCGAGGGAACCA 79371 >seq1457 Length=5722 Score = 147 bits (162), Expect = 3e-29 Identities = 167/223 (75%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 724920 GTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATC 724979 || ||||||||||| |||||| |||| ||| ||| |||| ||||||| ||| Sbjct 2669 GTCCTCAAGCAGGTCCACCCCGACACCGGA-----ATC-TCCTCCAAGGCCATGTCCATC 2616 Query 724980 ATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCG 725039 ||||||||||| ||||||||| | |||| ||||||| ||| ||| | || || Sbjct 2615 ATGAACTCGTTCGTCAACGACGTCTTCGAGCGCATCGCTGTCGAAGCCTCCAGGCTCGCC 2556 Query 725040 CGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATC 725099 | || |||||||||| ||| ||| | | || || ||||||||| |||| ||||| ||| Sbjct 2555 CACTACAACAAGCGCTCCACCATCTCCTCCCGGGAAATCCAGACCTCCGTCCGCCTCATC 2496 Query 725100 ATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | | |||||| |||||| ||||||||||||||| || |||| Sbjct 2495 CTCCCCGGCGAGTTGGCCAAGCACGCCGTCTCCGAAGGAACCA 2453 >seq2139 Length=34178 Score = 141 bits (156), Expect = 1e-27 Identities = 166/223 (74%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 724920 GTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATC 724979 |||||||||||||| |||||| |||| ||| ||| |||| ||||||| ||| Sbjct 2162 GTGCTCAAGCAGGTCCACCCCGACACCGGA-----ATC-TCCTCCAAGGCCATGTCCATC 2109 Query 724980 ATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCG 725039 ||||| || || ||||||||| | |||| ||||||| | || ||| |||||| || Sbjct 2108 ATGAATTCCTTCGTCAACGACGTCTTCGAGCGCATCGCCGGAGAAGCCTCTCGCCTCGCC 2049 Query 725040 CGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATC 725099 | || |||||||||| ||| ||| | | ||||| ||||| ||| |||| || || ||| Sbjct 2048 CACTACAACAAGCGCTCCACCATCTCCTCCCGCGAAATCCAAACCTCCGTCCGTCTTATC 1989 Query 725100 ATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | | ||| || || || | |||||||||||| || ||||||| Sbjct 1988 CTTCCCGGAGAGCTCGCGAAGCACGCCGTCTCTGAAGGCACCA 1946 >seq1889 Length=309471 Score = 138 bits (152), Expect = 2e-26 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 724964 CAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGA 725023 |||| | |||||||||||||||||||| ||||||||| | |||| ||||||| | ||| Sbjct 178021 CAAGGCTATGTCGATCATGAACTCGTTCGTCAACGACGTCTTCGAGCGCATCGCCGGCGA 178080 Query 725024 GGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGAC 725083 ||| ||| || |||| || |||||||||| |||||| | || || |||||||| Sbjct 178081 AGCCTCTCGTCTTGCGCACTACAACAAGCGCTCGACGATCTCGTCCCGGGAAATCCAGAC 178140 Query 725084 CGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | | || ||||| ||| | | ||| || || || | |||||||||||| ||||| |||| Sbjct 178141 CTCTGTCCGCCTCATCCTCCCCGGTGAGCTTGCAAAGCACGCCGTCTCTGAGGGAACCA 178199 Score = 132 bits (146), Expect = 7e-25 Identities = 212/301 (70%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 259883 ACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCC 259942 |||||| | ||||||| | | | ||||||| || ||||||| ||||| || ||| Sbjct 15460 ACCTACAACCTCATGTCGGATCGCTGGTTCACCCACGCATCGCCCACCCTCTTCAACGCC 15401 Query 259943 GGCACGCCGC--GCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGA 260000 || || | || |||| |||| || ||||| || | ||| | | || || | Sbjct 15400 GGAAC-CTGCAAGCCC-CAGATGAGTTCCTGCTTCCTTCTCACAATGCACGATGACTCCA 15343 Query 260001 TCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCA 260060 |||| ||||||| | || ||| ||||||||| | ||||||||| ||||||| |||| Sbjct 15342 TCGACGGCATCTTCAAGACCCTCTGGCAGTGCGCCTTGATCTCCAAGTCGGCCGGAGGCA 15283 Query 260061 TCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCC 260120 |||| | ||| ||| | |||||| |||| || | ||||| ||||||||| Sbjct 15282 TCGGACTCAACGCGCACTGCATTCGCGCCTCGGGAACCATGATTGCGGGAACCAACGGCA 15223 Query 260121 AGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACC 260180 ||||||||||| | |||||||| || || | ||| ||||||| ||||||||||| | Sbjct 15222 CCTCCAACGGCCTGATCCCCATGCTCCGAGTGTACAACAACACGGCTCGCTACGTCGATC 15163 Query 260181 A 260181 | Sbjct 15162 A 15162 Score = 102 bits (112), Expect = 1e-15 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 262116 CCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGGACGCCGTCAACCTGACCAGCA 262175 |||| ||||| || || || || |||||| |||||||||||||| ||||| | | Sbjct 14748 CCCAGATCGAAACTGGAACTCCTTACATGCTCTACAAGGACGCCTGCAACCGCAAGTCGA 14689 Query 262176 ACCAGCAGAACCTGGGCACCACGACAGAG-GCCAACCTGTGCACCGAGATCGTCCAGTTT 262234 |||||||||||||||| || | | || | ||||||||||||| ||||||||||||| Sbjct 14688 ACCAGCAGAACCTGGGAACGATCA-AGTGCTCCAACCTGTGCACTGAGATCGTCCAGTAC 14630 Query 262235 TCGTCGCCCACCGAGGCAAGTGTGTGCAAC 262264 ||||| ||| ||| | ||||||||| Sbjct 14629 TCGTCTCCCGACGAAGTCGCCGTGTGCAAC 14600 >seq1633 Length=74899 Score = 132 bits (146), Expect = 7e-25 Identities = 164/223 (74%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 724920 GTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATC 724979 |||||||||||||| |||||| || ||| ||||| || | ||||||||||| Sbjct 1567 GTGCTCAAGCAGGTCCACCCCGACAC---TGGAATCTCCTCGAA---GGCCATGTCGATC 1620 Query 724980 ATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCG 725039 ||||||||||| || |||||| | |||| || |||| | |||||| || || ||| Sbjct 1621 ATGAACTCGTTCGTGAACGACGTCTTCGAGCGAATCGCCGGTGAGGCCTCGCGTCTTGCG 1680 Query 725040 CGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATC 725099 | || |||||||||| || ||| | || || ||||||||| | || ||||| ||| Sbjct 1681 CACTACAACAAGCGCTCGACCATCTCGTCCCGGGAAATCCAGACCTCTGTCCGCCTCATC 1740 Query 725100 ATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | | ||| || || |||| ||| ||||||||||| || |||| Sbjct 1741 CTTCCCGGAGAGCTCGCCAAGCATGCCGTCTCCGAAGGAACCA 1783 >seq2079 Length=496671 Score = 120 bits (132), Expect = 4e-21 Identities = 160/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 332926 GTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGC 332985 |||||| || || ||||| ||||| || || ||| | |||||||| ||||| || Sbjct 171428 GTTGCATGCGAGCGCAAATCGCGTGGTTTTACTATAGATCTCCATGGTGCGGCGGAGCGC 171487 Query 332986 CTGTTGGGCCGCCGGCG-TGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCC 333044 ||| ||||| ||| || | | | ||| |||||||| ||||||||||||||||| || Sbjct 171488 CTGCTGGGC-GCCTTCGGTCATACTGTCCGCCTCGTCCAGGATGATGATCTTGTGCATCC 171546 Query 333045 CGTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCA 333104 ||| || || ||| | || |||| |||||| | ||||| |||||||| | Sbjct 171547 CGTTGGGGAGCGTCACCTTACTCTGGGCGAATCCTTTGATCTTGTTGCGGACGACGTCGA 171606 Query 333105 CGCCGCGCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTC 333144 ||||| |||||||| |||||||| || |||||||| || Sbjct 171607 TTCCGCGGTCGTCCGAGGCGTTGAGCTCCAGCACGGCGTC 171646 >seq318 Length=4676 Score = 114 bits (126), Expect = 2e-19 Identities = 160/223 (72%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 724920 GTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATC 724979 ||||||||||||||||| ||| || | | | |||| |||| | ||||| ||| Sbjct 3962 GTGCTCAAGCAGGTGCA--TCCGGACACTGG----AATCTCCTCCAAGGCTATGTCCATC 3909 Query 724980 ATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCG 725039 ||||| || || || ||||| | |||| ||||||| | ||| || ||||| ||| Sbjct 3908 ATGAATTCCTTCGTGAACGATGTTTTCGAGCGCATCGCCGGCGAAGCTTCGCGCCTTGCG 3849 Query 725040 CGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATC 725099 | || |||||||||| ||| ||| | | || || ||||| || | || ||||| ||| Sbjct 3848 CACTACAACAAGCGCTCCACCATCTCCTCCCGGGAAATCCAAACTTCGGTTCGCCTCATC 3789 Query 725100 ATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | | ||| || |||||| ||||||||| || ||||| |||| Sbjct 3788 CTCCCCGGAGAGTTGGCCAAGCACGCCGTTTCTGAGGGAACCA 3746 >seq1953 Length=45998 Score = 96.9 bits (106), Expect = 5e-14 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 2133558 GACGAGATGGTGACGGTGCGCGATATTGACTTTTTCTCCATGTGCGAGCACCACCTGCTG 2133617 ||||||||||| || || || || || || |||||| | |||||||||||||| | Sbjct 4058 GACGAGATGGTCCTCGTCCGGGACATCGAGTTCTTCTCCCTCTGCGAGCACCACCTTGTC 3999 Query 2133618 CCCTTTATCGGCAAGGCCCACGTGGGCTACCTGCCCGCGGGCAAGATCATCGGTCTGAGC 2133677 ||||| || ||||||| ||| | || || |||||| ||||| | || || ||| Sbjct 3998 CCCTTCATTGGCAAGGTGCACATCGGATATCTGCCCAACAAGAAGATTCTTGGGCTCAGC 3939 Query 2133678 AAGATCCCGCGCATCGTCGACATGTTTTCCGAC--CGCTTCCAAGTACAGGAGGCACTCA 2133735 ||| || |||| || ||||| ||| ||| ||| || | || || |||||| |||| Sbjct 3938 AAGCTCGCGCGTATTGTCGAGATG--TTCGGACGTCGTCTTCAGGTCCAGGAGCGGCTCA 3881 Query 2133736 CGCGCCAGATCGCC 2133749 || ||||||||| Sbjct 3880 CGAAGCAGATCGCC 3867 >seq687 Length=17398 Score = 86.0 bits (94), Expect = 9e-11 Identities = 141/203 (69%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 1817568 GCGCGCGTCTCA---GACTGGGGCACATGGAGGTTCATCTCGTCGCCGTCAAAGTCGGCA 1817624 ||||| ||||| ||||| || | ||| |||||||||||||||||||| || || || Sbjct 15527 GCGCGAGTCTCCAGCGACTGCGGGAGATGCAGGTTCATCTCGTCGCCGTCGAAATCTGCG 15468 Query 1817625 TTGTAGGTGCCCGTGACGGCCAGGTTGAACCGCATGGTACGGCCGGGCATGGGCACCACC 1817684 ||||||| ||| || | ||||| | ||| | || | ||| | | ||| Sbjct 15467 TTGTAGGGCGTCGTTACCGAGAGGTTCATCCGGAACGTTGACCAGGGAAGAATCTTGACC 15408 Query 1817685 TTGTGCATGAGCATGGAGCCCATGTGGAGTGAGGGCTGCCGGTTCATCACCACGGCGTCG 1817744 |||| | |||||| | ||||||| | ||||||||||| | || | | ||||| Sbjct 15407 CTGTGGCCCATCATGGACATCTTGTGGAGAGTCGGCTGCCGGTTGAAGACAATGACGTCG 15348 Query 1817745 CCGGCGCGCAGGTGACGCTCGAC 1817767 ||| |||||| |||||||| || Sbjct 15347 CCGTCGCGCATATGACGCTCCAC 15325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177534961935968