Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq2252 111 1e-19 seq2162 104 2e-17 seq1739 84.2 2e-11 >seq2252 Length=1130325 Score = 111 bits (122), Expect = 1e-19 Identities = 143/196 (73%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| |||| ||| || || | || || |||||||| || || || Sbjct 562236 TCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAG 562295 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| ||||||||||| | || | || |||||| ||| ||||||| ||| | | Sbjct 562296 ATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTTGCCTTGACGTTC 562355 Query 35666 GCCACCGTGTCGCTCGA---TTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTC 35722 | | ||||| ||| || ||||||| ||||| || || || |||||||||||| Sbjct 562356 TCAATGGTGTC---CGAACCCTCGACCTCCAGGGTGATGGTCTTTCCGGTCAAAGTTTTC 562412 Query 35723 ACAAATATCTGCATTC 35738 || || |||||||||| Sbjct 562413 ACGAAGATCTGCATTC 562428 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||| ||| | |||| ||||| || |||||||| |||| ||| || || | || || Sbjct 563530 ACCAGATGGAGCGTAGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCG 563589 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 |||||||| || || || |||| ||||||||||| | |||| | ||||||||| | Sbjct 563590 AGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCTTGG 563649 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 ||||| ||| | | | | ||||| | ||| ||||| | ||||| || || Sbjct 563650 ATCTTAGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCGACCTCGAGGGTGATGGTCTTT 563709 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||||||| ||||| || || ||||| Sbjct 563710 CCGGTCAAAGTCTTCACGAAGATTTGCAT 563738 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| |||| ||| || || | || |||| |||||| || || || Sbjct 563195 TCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCTTCCAACTGCTTTCCGGCGAAG 563254 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| ||||||||||| | |||| | || || || |||||| ||||| || Sbjct 563255 ATCAAGCGCTGCTGGTCTGGGGGAATTCCTTCTTTATCTTGGATCTTGGCCTTCACGTTT 563314 Query 35666 GCCACCGTGTC-GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || || | || || ||||||| ||||| || || || |||||||| ||||| Sbjct 563315 TCGATAGTATCAGATC-CCTCGACCTCCAGGGTGATGGTCTTTCCGGTCAAAGTCTTCAC 563373 Query 35725 AAATATCTGCAT 35736 || || ||||| Sbjct 563374 GAAGATTTGCAT 563385 >seq2162 Length=74254 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || ||| || || | || |||| |||||| || ||||| Sbjct 49290 CTCCTTCTGGATGTTGTAGTCACTCAAAGTGCGGCCATCTTCCAACTGCTTGCCAGCAAA 49231 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| |||||||||||| | ||||| | |||||||| |||||| |||| | Sbjct 49230 GATCAGCCGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCTTGGATCTTAGCTTTCACGTT 49171 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || ||||| | ||||||||||| || |||| ||| || || Sbjct 49170 TTCAATGGTGTCAGAACCCTCGACCTCAAGAGTGATCGTTTTGCCTGTCAGAGTCTTGAC 49111 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 49110 AAAGATCTGCAT 49099 >seq1739 Length=92152 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 35593 CTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652 |||||| || || |||| ||||||||||| | |||| | |||||||||| |||||| Sbjct 77047 CTTACCGGCGAAGATCAGGCGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGGATCTT 76988 Query 35653 TTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 ||| | | | | |||||||| | || ||||||| |||||||| || || || Sbjct 76987 GGCCTTGACGTTCTCGATGGTGTCGCTAGCCTCGACCTCCAGAGTGATCGTCTTGCCGGT 76928 Query 35713 CAAAGTTTTCACAAATATCTGCAT 35736 || || || ||||| |||||||| Sbjct 76927 CAGCGTCTTGACAAAGATCTGCAT 76904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450777461589120