Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq2252 131 2e-25 seq2162 114 1e-20 seq1889 96.9 4e-15 >seq2252 Length=1130325 Score = 131 bits (144), Expect = 2e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || || || ||||| ||||| || || |||||||||||| | ||| || ||| Sbjct 562721 ACCAGATGGAGCGTAGATTCTTTCTGGATGTTGTAGTCGGACAGGGTCCTTCCATCCTCG 562780 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| || || || || ||||| ||||||||||| || || || || ||||| |||||| Sbjct 562781 AGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGATCTGGGGGGATTCCCTCTTTATCTTGA 562840 Query 134625 ATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 || ||| |||| || | |||| ||||| || || || || ||||| ||||| || Sbjct 562841 ATCTTTGCCTTGA-CGTTTTCAATGGTGTCCGAACCCTCAACTTCAAGAGTGATGGTCTT 562899 Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||||| ||||| || ||||||||||||||| Sbjct 562900 TCCGGTCAAAGTCTTCACGAAAATTTGCATT 562930 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| || | || || || || || |||||||| || ||||||||||||| Sbjct 563740 CCTCCACGGAGGCGGAGGACTAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGCTG 563799 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| || || |||||||| || || || || |||| |||||||||||||| || Sbjct 563800 AGGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGATCGGGAGGA 563859 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| || | ||||| || | ||| || Sbjct 563860 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTTTCGATAGTGTCAGAGGCTTCGACC 563919 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || || || | || || ||||| |||||||| Sbjct 563920 TCGAGGGTGATGGTCTTTCCCGTGAGGGTCTTGACGAAGATTTGCAT 563966 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 || || || | ||| || | |||||||| || ||||||||||| || |||||||||||| Sbjct 562197 TTGCCACCACGGAGGCGGAGGACGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCG 562256 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | ||| | || |||||||| || || || || |||| |||||||| || || Sbjct 562257 GACAAAGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCTGGG 562316 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || ||||| || || || || || ||| ||||| || | ||||| || || Sbjct 562317 GGGATGCCCTCCTTATCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCCGAACCCTCG 562376 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || || ||||| || ||||| |||||||| ||||| || |||||| Sbjct 562377 ACCTCCAGGGTGATGGTCTTTCCGGTCAAAGTTTTCACGAAGATCTGCATT 562427 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || || || ||||| |||||||| || |||||||||||| | ||| | || ||| Sbjct 563530 ACCAGATGGAGCGTAGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCG 563589 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| || || || || |||| |||||||| || || || || || || || ||||| Sbjct 563590 AGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCTTGG 563649 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| || | ||||| || | ||| || ||||| || ||||| || Sbjct 563650 ATCTTAGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCGACCTCGAGGGTGATGGTCTTT 563709 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| ||||| || ||||| |||||||| Sbjct 563710 CCGGTCAAAGTCTTCACGAAGATTTGCAT 563738 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || | ||| || | |||||||| || ||||||||||| || ||||||||||| | Sbjct 562929 TTCCACCACGGAGACGAAGAACGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAC 562988 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | |||| | || || | ||| || || || || ||||| |||||||| || || | Sbjct 562989 TGAGGGTGCGGCCATCTTCCAACTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGGG 563048 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || || || || ||||| || || ||||| || | ||||| || | ||| | Sbjct 563049 GAATTCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCGA 563108 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | ||||| || || || || || || | || || || || |||||||| Sbjct 563109 CCTCGAGGGTGATAGTCTTTCCCGTGAGGGTCTTGACAAAGATTTGCAT 563157 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||||| || || || |||||||| || |||||||||||| Sbjct 563159 CCACCACGGAGACGAAGGACGAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGAC 563218 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || | ||| || || || || ||||| |||||||| || || || Sbjct 563219 AAAGTGCGGCCATCTTCCAACTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGA 563278 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || |||||||| ||||| || || || || || | || || || || || Sbjct 563279 ATTCCTTCTTTATCTTGGATCTTGGCCTTCACGTTTTCGATAGTATCAGATCCCTCGACC 563338 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || ||||| ||||| || ||||| |||||||| Sbjct 563339 TCCAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATTTGCAT 563385 >seq2162 Length=74254 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||||| ||||| | || ||||| || ||||| ||||| || ||||||||||| | Sbjct 49327 TTCCTCCTCGAAGTCGGAGAACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAC 49268 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | ||| | || || | ||| ||||| ||||| |||| |||||||| ||||| | Sbjct 49267 TCAAAGTGCGGCCATCTTCCAACTGCTTGCCAGCAAAGATCAGCCGCTGCTGGTCGGGAG 49208 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCC 134663 | || ||||| || ||||| || || ||| | || | |||| ||||| || || Sbjct 49207 GAATTCCTTCCTTGTCTTGGATCTTAGCTTTCA-CGTTTTCAATGGTGTCAGAACCCTCG 49149 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || ||||| || ||||| || || | ||| || || || || ||||| Sbjct 49148 ACCTCAAGAGTGATCGTTTTGCCTGTCAGAGTCTTGACAAAGATCTGCAT 49099 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||||| || || | || | ||| ||||| ||||||||||| ||||| ||||| | Sbjct 49097 CCTCCTCGAAGACGGAGGACCAAGTGAAGCGTCGATTCCTTTTGGATGTTATAGTCACTC 49038 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || || || || || ||||| ||||| ||||||||||| || || Sbjct 49037 AAAGTGCGGCCATCCTCAAGTTGCTTCCCAGCAAAGATCAATCGCTGCTGATCTGGGGGG 48978 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || |||||||| |||||||| || |||||| || | | || || || || Sbjct 48977 ATTCCTTCTTTGTCTTGAATCTTAGCTTTGACGTTTTCGATCGAATCAGAGCCCTCGACT 48918 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || | || || ||||| || || | || || |||||||| |||||| Sbjct 48917 TCCAATGTGATCGTTTTGCCCGTGAGGGTCTTCACGAAAATCTGCATT 48870 >seq1889 Length=309471 Score = 96.9 bits (106), Expect = 4e-15 Identities = 255/388 (66%), Gaps = 6/388 (2%) Strand=Plus/Minus Query 7525 TACTTGTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGTG 7584 |||||| |||| ||||||||| | | | || || ||||||||||| |||| ||| Sbjct 15562 TACTTGCTGAAGATCAACGGCAAGGTCACTGAGCGTCCCCAACACATGCTTATGCGTGTG 15503 Query 7585 GCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTCT 7644 || ||||| | ||| || ||||| ||||| ||| | ||||| ||| | | ||||| Sbjct 15502 GCCGTGGGAGTCCACAAGGAGGACATCGACGCTGCCATCGAAACCTACAACCTCATGTC- 15444 Query 7645 TTGAAAC---AGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCT 7701 | | | ||| || ||||| ||||||||| | || ||| || || | ||| Sbjct 15443 --GGATCGCTGGTTCACCCACGCATCGCCCACCCTCTTCAACGCCGGAACCTGCAAGCCC 15386 Query 7702 CAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAAC 7761 || || || || || | || || |||| ||| ||| |||||||||||| | ||| Sbjct 15385 CAGATGAGTTCCTGCTTCCTTCTCACAATGCACGATGACTCCATCGACGGCATCTTCAAG 15326 Query 7762 ACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAAC 7821 || || | | |||||| || ||||| | | ||| || || || || |||| || Sbjct 15325 ACCCTCTGGCAGTGCGCCTTGATCTCCAAGTCGGCCGGAGGCATCGGACTCAACGCGCAC 15266 Query 7822 GACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAG 7881 | | |||||| || | | || | | |||||||| | ||| ||| | Sbjct 15265 TGCATTCGCGCCTCGGGAACCATGATTGCGGGAACCAACGGCACCTCCAACGGCCTGATC 15206 Query 7882 CCCATGTTGCGCGTGTTCAATAACGCGG 7909 |||||| | || |||| ||| ||| ||| Sbjct 15205 CCCATGCTCCGAGTGTACAACAACACGG 15178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505380306737280