Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_027339.1 Length=38389 Score E Sequences producing significant alignments: (Bits) Value seq2599 219 1e-52 seq2638 205 2e-48 seq2629 140 8e-29 seq2774 120 7e-23 >seq2599 Length=15424 Score = 219 bits (242), Expect = 1e-52 Identities = 379/544 (70%), Gaps = 10/544 (2%) Strand=Plus/Plus Query 35179 CTCACCAAAGAACAGCACGAGTGGCTGAATGGCTGGCTTGAACTGTGGGGCGCATGGGTT 35238 || || ||| |||||| || ||| | || |||| | | ||||||| ||||||||| Sbjct 11615 CTAACAAAACCACAGCAGGACTGGATTGATAACTGGTTAAATTTGTGGGGGGCATGGGTT 11674 Query 35239 TATTCAGGTCGTCTGGAAAAGCGCATGAGCAGCGTAATAGCTAAGTTCATGGAGAGCGTA 35298 | || | | || |||||| || | | | || |||||||||| || || Sbjct 11675 CACAGTGGCAGAATCGATAAGCGCCAGATAAACATGATTTATAAGTTCATGATGACTGTT 11734 Query 35299 GAGCCGGG-AAGAGTTATGACAAGGCCAATGTGTAATGATGATGATGGAATGTTGATTTC 35357 ||||| | ||| | | ||| | || |||| |||||||||||||| ||||||||||| Sbjct 11735 GAGCCTCGCAAGGGGCAAGACC-GCCCTGTGTGCAATGATGATGATGGTATGTTGATTTC 11793 Query 35358 TCAGGTCGTCGATTCCGTCATGTACATTGACAAGAAAGCCTTTGGTATCCTCCTCAGCTA 35417 |||||| |||||| |||| |||| ||||||| | ||||||| ||| || | |||||||| Sbjct 11794 TCAGGTGGTCGATGCCGTTATGTGCATTGACCAAAAAGCCTATGGGATTTTACTCAGCTA 11853 Query 35418 CTACGCCCACGGCTCTTCCAAGCACGCCATTGCATCTTACTATCATCGCGTCGCAAGACC 35477 |||||| |||||| | || |||| | ||| || |||| ||||| | || | ||| Sbjct 11854 CTACGCTCACGGCGCATCGAAGCTGTCAATTTCAACTTATTATCACAAGATTGCGAAACC 11913 Query 35478 TCGCAAGATGTTATGCCGGG--GCGGCGGGCGCATTCAAAAACCATCGCTCGCAACCTGT 35535 |||| ||| ||| || | ||||||||| | || || || | | || ||| Sbjct 11914 CCGCAGAATG--ATGACGCGCTCTGGCGGGCGCTTAAGGAAGCCTTCTCGTGGGACATGT 11971 Query 35536 CGACGGGAAGTTGACGAAATCCTCAATGCCTCGTTGTTTA--TGATTTACCCGGTTCTGG 35593 || || ||||| || ||||| || || | |||||| | | || | | |||| Sbjct 11972 CGCCGTGAAGTGGATGAAATTCTGGCAGC--CAGTGTTTACCTATTATATCAGCCTCTGC 12029 Query 35594 ATAGTGCGTTTAAAAACCGGAAACGTGTAGAGAAAATTAAACATGTAGCATAGAACGTGT 35653 | | ||| ||||| || ||||||||||||||||| ||| | | || |||||||||| Sbjct 12030 AAAATGCATTTAATTCACGTAAACGTGTAGAGAAAATCAAAAAGATTGCCTAGAACGTGT 12089 Query 35654 TGACATCATTGAGCAAATGAGCAACACTATTCGCATAAGCTGCCGTTAGTGACTCTTAAG 35713 ||||| | ||||||||||||||| | | || | | | |||||| |||| ||||| | Sbjct 12090 TGACACTAATGAGCAAATGAGCAATAATTTTTGGTAAGGTTGCCGTCAGTGTTTCTTAGG 12149 Query 35714 TTGC 35717 | || Sbjct 12150 TGGC 12153 >seq2638 Length=7155 Score = 205 bits (226), Expect = 2e-48 Identities = 377/545 (69%), Gaps = 12/545 (2%) Strand=Plus/Plus Query 5004 GAATTTGCCGAACAGGAAGAAATTGCCTTTACCTCAGGCGATGGCACCAAGAAGCCGAAA 5063 || ||||| || ||||| |||| || |||||| ||||| |||| || ||||| ||| Sbjct 71 GAGTTTGCTGAGCAGGAGGAAAGCGCTTTTACCCACGGCGACGGCAAGAACAAGCCAAAA 130 Query 5064 GGGTTCCTGGCGTATG--AATCCACTGATGAAACCGACAAGGTCCGGGCGTTCGGCAAAC 5121 || | |||||||| | | | | | || | |||||||| || | || | Sbjct 131 GGCCTGCTGGCGTACGGTAGTGAAGCGCTGGA--CGACAAGGATCGTCAATGGGGTACGT 188 Query 5122 TTCAGCATATTGTATCCGGCGAAGCG-ACCGCGGTGACCGCAGACGCCATTATCAAACTG 5180 | ||||| | || | | |||| |||| ||| || ||||||| ||| | |||||| Sbjct 189 TGCAGCACCT-GTTGCTGAAAAAGCCCACCGAGGTCACGGCAGACGACATCCTGAAACTG 247 Query 5181 ATTTACACGCTGCGTAAGGCACACCGCACTGGCGCGAAGTTCATGATGAACAACAACAGC 5240 || ||||| ||||| ||| || |||||| || ||||| ||||||||||||||||| | Sbjct 248 ATCTACACCCTGCGCAAGCCATACCGCAACGGGGCGAAATTCATGATGAACAACAA---C 304 Query 5241 CTGTT-TGCCA--TCCGTCTGCTGAAAGACACCGAGGGTAACTATCTGTGGCGTCCTGGG 5297 ||||| | || | || ||||||||||| |||| || || ||||||| || || Sbjct 305 CTGTTATTTCAGGTACGCACGCTGAAAGACAGTCAGGGCAATTACCTGTGGCAGCCGGGT 364 Query 5298 CTGGAACTGGGGCAGCCATCCTCTCTGGCGGGTTACGGTATCGCTGAAAACGAGCAGATG 5357 || ||||||| ||||| || | ||| ||| ||||||||||| |||||||| ||| | Sbjct 365 TTGCAACTGGGACAGCCCTCTGCGCTGCTGGGCTACGGTATCGCGGAAAACGAACAGTTT 424 Query 5358 CCGGATATTGCCGCGGATGCGAAAGCCATTGCATTTGGTAACTTCAAACGGGGTTACACC 5417 ||||| | | || | ||| | | | || |||||||| ||||| | |||||| Sbjct 425 GCGGATTTGGGCGTCGGTGCCGTGCCGGTGGTGTTCGGTAACTTTAAACGTTGCTACACC 484 Query 5418 ATCGTTGACCGTATCGGTACCCGCATTCTTCGCGATCCGTACACCAATAAACCGTTTGTC 5477 || | ||| | | ||| || || || || |||||||||||| | || |||||| || Sbjct 485 ATTTTGGACAGGCTGGGTGTACGTATGCTGCGTGATCCGTACACCCACAAGCCGTTTATC 544 Query 5478 GGTTTTTATACCACCAAGCGCACCGGCGGCATGCTGGTCGATTCGCAGGCCATCAAACTG 5537 || || ||||||||||| || | ||||||| || | || || |||||| Sbjct 545 CACTTCTACACCACCAAGCGGGTGGGTTCCCTGCTGGTGGACAGCAACGCGATGAAACTG 604 Query 5538 CTGAA 5542 ||||| Sbjct 605 CTGAA 609 >seq2629 Length=15125 Score = 140 bits (154), Expect = 8e-29 Identities = 122/152 (80%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 34695 GATAAACTTAAGATTCGAAAACTCGCCTTAAAGCCCCGCAGTTACTGGATTAAACAAGCC 34754 |||||||| || || || | || |||| ||||||||||| |||||||||||||| Sbjct 152 GATAAACTCAAAGCCCGCAAGTTAGCAGTAAAACCCCGCAGTTATTGGATTAAACAAGCA 93 Query 34755 CAACAAGCCGTAAACGCCTTCATCAGAGAAAGAGACCGCGACTTACCATGTATCTCGTGC 34814 ||||||||||| ||||| | ||||||||||||||||| || || ||||| || || ||| Sbjct 92 CAACAAGCCGTCAACGCATATATCAGAGAAAGAGACCGTGATTTGCCATGCATATCATGC 33 Query 34815 GGAACGCTCACGTCTGCTCAGTGGGATGCCGG 34846 |||||| | ||||||||||||||||| || Sbjct 32 GGAACGTTTCAATCTGCTCAGTGGGATGCTGG 1 >seq2774 Length=20939 Score = 120 bits (132), Expect = 7e-23 Identities = 72/76 (95%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 35738 GGGTCAGTCGTATAAAGGTCATTACGGAAGGCTGTTAACCTTCTTATCGTGGTTCGAGTC 35797 |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct 20146 GGGTTAGTCGTATAAAGGTTATTACGGAAGGCTGTTAACCTTCTTATCGTGGTTCGATTC 20087 Query 35798 CACGCTGTCCCGCCAA 35813 |||||| ||||||||| Sbjct 20086 CACGCTATCCCGCCAA 20071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122719026183968