Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_027368.1 Length=33828 Score E Sequences producing significant alignments: (Bits) Value seq2600 111 3e-20 >seq2600 Length=29343 Score = 111 bits (122), Expect = 3e-20 Identities = 289/438 (66%), Gaps = 12/438 (3%) Strand=Plus/Minus Query 15240 TCAACAAAGATGCACATAAACAAGTTGTTGA---AATCGGTTTCGTTGTACTCTTCGCGC 15296 || ||||| | |||||||||||| |||| | |||| | ||| || | | ||| Sbjct 20158 TCCACAAACACGCACATAAACAACATGTTAAAAGAATCAG---GGTTATATTTATTGCGT 20102 Query 15297 AGCTCGTCGATGTCGAACAGGTCACAGCCACCCTTGGCGGCATCTTCAATCGTGACCACA 15356 ||| ||||||| | | || | || || || ||||| |||| ||| | ||| Sbjct 20101 AGCCTGTCGATGCTGGCTAAGTTGAAACCGCCATTTATCGCATCCTCAAGCGTAATTACA 20042 Query 15357 TAACGCCACTGCTTATCCGGGCAAAGGCGACCGCCATCGCGCAGTTCATCAAACGTTGGG 15416 || ||||| || ||| |||||| || || ||||| |||| |||||||||| | || Sbjct 20041 TATCGCCATTGACCATCAGGGCAATCACGCCCACCATCCCGCAATTCATCAAACTTAGGA 19982 Query 15417 AACTCGATGTTCTTGCGTCGTTCGCTGCCAT---CGCGCCATTTGTCCCCAGTCCAGAAC 15473 || | || || || || ||| | ||| | ||||||| ||| || ||||| || Sbjct 19981 AATACAATTTTTTT---ACGCTCGGGGTCATTACCTCGCCATTCGTCACCCGTCCAAAAT 19925 Query 15474 GGGTAAGCGGGGTGCATTTTGGTTGAAGGGGTGGAAAAGTACGTCTTGCGCCACTTCTTA 15533 || || ||||| || |||| | || |||||||| || ||| | ||||| | | | Sbjct 19924 GGATAGGCGGGATGTGTTTTCGCACTGGGAGTGGAAAAATAAGTCGTTCGCCAATGGTCA 19865 Query 15534 TGCGTGGCCATCGCTGAGGCGACTTTGTTCAGCTCGTCAAACTTGCCGATCCAGAAATAC 15593 || || ||||| || |||| |||| || | | | ||| | | ||||||||| Sbjct 19864 TGTGTTGCCATTGCAGAGGATACTTCATTAAACCTTTTAAAATCAGGTACCCAGAAATAT 19805 Query 15594 TCATCCACATACACATGGCCGTGGTAACTCTGCGCTGTTTTGCCATTGGTAGACAGGAAA 15653 || || ||| | ||| ||| ||| |||||||| || |||||| || | || Sbjct 19804 TCGTCACAATATAAATGCCCGCTGTAGGATTGCGCTGTATTTTTATTGGTCGATAAAAAG 19745 Query 15654 TGCAGCTCAGCGCCATTA 15671 ||| ||||| |||||| Sbjct 19744 CGCAATTCAGCTCCATTA 19727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 108124322566720