Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_027382.1 Length=37146 Score E Sequences producing significant alignments: (Bits) Value seq2557 176 1e-39 seq2595 125 2e-24 >seq2557 Length=24734 Score = 176 bits (194), Expect = 1e-39 Identities = 293/419 (70%), Gaps = 12/419 (3%) Strand=Plus/Minus Query 35527 ATTGGCTATGTAAGGGTATCAACAAATGACCAGAATACAGACCTGCAACGAAACGCTCTT 35586 ||||||||| | || |||||||||| ||| ||||||| || ||||| |||| || || Sbjct 21620 ATTGGCTATATCAGAGTATCAACAAGTGATCAGAATAGTGATTTGCAAAGAAATGCA-TT 21562 Query 35587 GTTTG---TGCAGGATGTGAACAAATATTTGAAGATAAATTAAGCGGAACAAGGACAGAC 35643 | | | || |||||| || |||||||| ||| | || || | || ||| | Sbjct 21561 GACCGATATTCAC--TGTGAAATGATTTTTGAAGACAAAATCAGTGGGAGAA---CAGCC 21507 Query 35644 A---GACCTGGATTAAAACGCGCTTTAAAGCGTCTTCAAAAAGGTGACACACTGGTTGTC 35700 | | || ||||||||||| || ||||||| || || || || |||||||||||| Sbjct 21506 AATCGCCCAGGATTAAAACGTGCGTTAAAGCACCTGAAATTTGGCGATACACTGGTTGTC 21447 Query 35701 TGGAAACTGGATCGCCTCGGGCGAAGCATGAAACATTTGATTTCTCTCGTAGGGGAATTA 35760 ||||| ||||||| || ||||| || | ||| || || | | || | ||| | Sbjct 21446 TGGAAGTTGGATCGTCTGGGGCGCAGTGTAAAAAATCTGGTGACACTAATTTCAGAACTG 21387 Query 35761 CGAGAGCGAGGGATTAATTTTCGCAGTCTTACTGACAGTATTGATACGTCATCTCCAATG 35820 | || | || ||| |||| | || || || |||||||||||||| | | ||| Sbjct 21386 CATGAACAGGGAATTCATTTCCAGAGCCTGACGGACAGTATTGATACCAGTACCGCTATG 21327 Query 35821 GGGCGTTTTTTCTTCCACGTTATGGGTGCCCTGGCTGAGATGGAACGAGAACTAATCATC 35880 ||||| ||||||||||| || ||| | || ||||| || |||||||| || | ||| || Sbjct 21326 GGGCGGTTTTTCTTCCATGTGATGAGCGCACTGGCCGAAATGGAACGCGAGTTGATCGTC 21267 Query 35881 GAGAGAACGATGGCTGGACTTGCTGCTGCCAGAAATAAAGGCCGTATCGGTGGGCGACC 35939 || ||||| | || || || ||||||||| || | | || | ||||| || ||||| Sbjct 21266 GAAAGAACCAATGCAGGTCTGGCTGCTGCCCGACAACAGGGAAGGATCGGCGGACGACC 21208 >seq2595 Length=21780 Score = 125 bits (138), Expect = 2e-24 Identities = 216/312 (69%), Gaps = 4/312 (1%) Strand=Plus/Plus Query 32530 TGGACAACTGCGCAATTTATTTCGTGGCTGGAGAGTCAGGGGGCATTTAACCATCCTTAC 32589 |||||||||| | |||||| | ||||| | ||| | | || |||||||| |||||| Sbjct 21301 TGGACAACTGAAGAGTTTATTGCATGGCTAAAAAGTAAAGATGCTTTTAACCACCCTTAC 21360 Query 32590 TGGATGTGCAAAGGCTCATGGGCTTATGCAAATAATAAGGTCATTACAGATACAGGTTGC 32649 |||||||| ||||| || ||| | ||||| | || | || || ||||| || || Sbjct 21361 TGGATGTGTAAAGGATCGTGGTCATATGCGAGCAACAGAAGAATCACTGATACTGGCTGT 21420 Query 32650 GGAAATATTTGTCTTGCAGGTGCTGTGGTGGAAGTTATTGGCACTCGCGGCGCAATGACC 32709 || ||| | || |||||||| |||||||| || || | | | |||||| Sbjct 21421 GGTGCAATTCACTTAGCGGGTGCTGTTGTGGAAGTCATGGGGCTTGAAAGTGTAATGACG 21480 Query 32710 ATACGTGTTACTACACCGAGTACGTCCAGCGGTGGCGGAATTACTAACGCTCAATTCACT 32769 || |||||||| || | ||| || | | |||| | ||| | ||||||||||| ||| Sbjct 21481 ATCCGTGTTACAACGGCTCCTACATCAATAGATGGCTGTATTCCGAACGCTCAATTTACT 21540 Query 32770 TATATTAATCATGGCAATGCTTATGCTCCTGGCTGGCGACGAGACTACAACA---CGAA- 32825 ||| || || || || | ||||| ||| | ||| || | ||||| |||| |||| Sbjct 21541 TATGGAAACCACGGTAAGGATTATGTTCCAAGTTGGAGAAGGGACTATAACACTGCGAAT 21600 Query 32826 AAACCAGCAGCC 32837 |||||| | ||| Sbjct 21601 AAACCATCTGCC 21612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118741561462144