Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_027398.1 Length=38742 Score E Sequences producing significant alignments: (Bits) Value seq2664 524 2e-144 seq2629 140 8e-29 >seq2664 Length=5510 Score = 524 bits (580), Expect = 2e-144 Identities = 1229/1826 (67%), Gaps = 54/1826 (3%) Strand=Plus/Minus Query 29845 ACCTGTTGCCAAACGGCAAGAAAGAGGGGCATGAGTGGGTTGCCGGTAACGTCAATGGTG 29904 ||||| |||| |||| || | |||||||||||||||| ||| ||||| || | Sbjct 2328 ACCTGCTGCCGGACGGACGCAAGGCCGGGCATGAGTGGGTTGTCGGATCGGTCAACGGGG 2269 Query 29905 ACAAGGGAAACAGCCTTAAGGTCAACCTTAGCGGCAAGAAAAAATGGGCTGATTTCGCTG 29964 | || |||||||| || | || | |||||||||| ||| | || || |||| Sbjct 2268 AAGCCGGCAACAGCCTGAAAATTAATTTGTCCGGCAAGAAAGTCTGGTCCGACTTTGCTG 2209 Query 29965 AGGGAGACGGCGGTGACATGCTTGATTTGTGGATGGCATGT-CGTGGAATTAACCTGCAT 30023 | || |||||| || || | ||||||||| || || || |||| | |||||| Sbjct 2208 AAGGCACCGGCGGGGATCTGTTGGATTTGTGGGTG-CAGGTGCGTGATTGTGGGCTGCAT 2150 Query 30024 CAGGCTATGCAGGAAGCGAAAGCATTTCTCGGTATCAAGGATGACGATCACCATTTCGAT 30083 ||||| ||| ||| || ||| ||||| || || |||||||||| |||||| | Sbjct 2149 CAGGCCATGACGGAGGCAAAACAGTTTCTGGGGATTGCCGATGACGATCGCCATTTTGCC 2090 Query 30084 GCCAAACGTGAGAAAAAA--TTCTCCAGACCTGATCGCAAGAAAATCGCCCGCTACGTTA 30141 ||||||| || |||||| || ||| | || ||||| | | | || |||| Sbjct 2089 GCCAAACA-GACAAAAAACTTTGTCCGG-CCAGATCGTCATAGGCTGGCAAAACACGTCT 2032 Query 30142 CCAGAACAGAATCCCATCTTGAG--TACCTG-CAATCGCGTGGCATA--TCGCCAGAAGT 30196 || | | || || | || | || ||| | | | || || || |||||||| Sbjct 2031 TCAAACCTGA--CCAGTGTTATGCCTATCTGGCTAGC-CGGGGGATCAGTCGCCAGACCG 1975 Query 30197 CGTAAAGCGCTACGAGGTTGTCAGCGGCAAGGTGTGGAATG-----GAGAACGAGAACTT 30251 || || ||| | ||| ||| | || || ||| | || ||| | || Sbjct 1974 CGGAA-GCGTTT-GAGATTGGGGATGCCAGTGTCTGGTTTCCTGCTGAAAACAGGGTATT 1917 Query 30252 GATG--CACTGGTGCTTCCG-TACAAACGCGATGGTGAGTTGTTGCAGGTCAAGCGAATC 30308 | | || || ||||| |||||||| | || || |||||||||||||||| ||| Sbjct 1916 GCCGGCCATTGC--CTTCCCCTACAAACGGAACGGGGAACTGTTGCAGGTCAAGCGCATC 1859 Query 30309 AGCACTGAGCGCCCGGACGGGAAGAAAGTCATTATGGCAGAAGGTGATTGCGAACCTTGT 30368 || || | ||| || | || || ||||| || ||||| |||| || ||||| || Sbjct 1858 AGTACGGTGCGTCCCAAGGGTAAAAAAGTGATGATGGCGGAAGCCCGGTGTGAACCCTGC 1799 Query 30369 CTGTTCGGATGGCAGGCTCT---GGACGCTGGCGTGAGGGCGGTTGTACTTTGCGAAGGC 30425 ||||| || |||||||| | | |||||| | | | ||| | | || ||||| Sbjct 1798 CTGTTTGGCTGGCAGGCAATACCGAACGCTGTCC---GAGTGGTGATTTTGTGTGAAGGG 1742 Query 30426 GAAATTGATTGTATGAGCTATGCGCAATACGGCATCTCGGCGTTATCCGTGCCGTTTGGT 30485 || || || || |||| ||| || ||||| | |||| | || |||||||| || Sbjct 1741 GAGATCGACTGCCTGAGTTATCACCAGTACGGTTTGCCGGCCCTGTCTGTGCCGTTCGGG 1682 Query 30486 GGCGGGAAAGGCGCTAAGCAACAGTGGATTGAGTTTGAGTATCACAACCTCGACAGGTTT 30545 || || || || || || || ||||||||||||||||| || ||||| || || | ||| Sbjct 1681 GGTGGTAAGGGGGCCAAACAGCAGTGGATTGAGTTTGAATACCACAATCTGGATCGCTTT 1622 Query 30546 GAGGAAATATTCATCTCGATGGACGTTGATGATGTTGGTCGTGAAGCCGCAAGGGAAATC 30605 |||||||| | || || ||||| ||||| || || || || || || | || || Sbjct 1621 GAGGAAATTTGGATTTCCATGGATAACGATGACGTGGGGCGGGAGGCGGCCAAAGAGATT 1562 Query 30606 GCAAGCCGACTCGGTGAACATCGTTGCCGTCTTGTTACTCTGCCGTACAAAGACATCAAC 30665 || ||||| | || | |||||| ||||| | || | ||||||||||| || ||||| Sbjct 1561 GCCAGCCGGTTAGGGGCACATCGCTGCCGGTTAGTCAGCCTGCCGTACAAGGATATCAAT 1502 Query 30666 GAATGCCTGATGAACGGTGTTACCGAGGATGAAATCTGGCAGTACATCGGCACGGCATCC 30725 | | || | || | || |||||| | || | | | | |||||| || Sbjct 1501 GCCGGTTTGCAGGCGGGCATGACACCGGATGAGGTGGTGCGTTGCCTTGAAACGGCAGCC 1442 Query 30726 TACTTTGATCCTGAAGAACTCTACAGCGCGCGAGAGTTTTACCAGGACACTATCAACGCT 30785 | ||||| || ||||| | | ||| || || |||||||| |||||||| || | || Sbjct 1441 TTTTTTGACCCGGAAGAGTTGTGCAGTGCCCGCGAGTTTTATCAGGACACGATTGAGGCG 1382 Query 30786 TTCTACGGCAAGCAGCAGTATCTGTTTAATCCACCGTGGGAATCTCTGGCAGATAA---A 30842 |||||||| || || | ||||||| |||||||||| | ||| || | Sbjct 1381 TTCTACGGTCAGGCCCACTGCCTGTTTACCACACCGTGGGA----CAGGCTGAATCCGCA 1326 Query 30843 TTCCAGTTTC-GTGAGGCCGAGTTGACGCTGGTCAATGGTGTGAACGGTCACGGAAAAAC 30901 || ||||||| | || | ||| ||||| || ||||||| || ||||| |||||||||| Sbjct 1325 TTTCAGTTTCCGCGAATCAGAGCTGACGGTGCTCAATGGGGTCAACGGGCACGGAAAAAG 1266 Query 30902 GGAGGTTGTCGGGCATATGGCACTTGAGGCAATGCGTCAGGGTGTGAAGACGTGCATCGC 30961 ||| | |||||||| || ||| || ||| | ||||| | | | || | || Sbjct 1265 TGAGATGGTCGGGCACCTGCTGTGTGAAGCGATGGGGCAGGGCATCCGGGCCTGTGTGGC 1206 Query 30962 GTCACTTGAGCTGAAGCCTGGTATTCTCCTTAAGCGCCTTACCCGTCAGGCGACGTGCTG 31021 || ||||||||||||| || | || ||||| || |||| |||||| | |||| Sbjct 1205 CTCTTTTGAGCTGAAGCCGGGACAGTTACTGAAGCGGCTGACCCAGCAGGCGGCTTGCTC 1146 Query 31022 CAAGATGCCGCCAGTGCTGGAAATTGACTCTGCATTTAAATTTTATGACGAAAGACTTTG 31081 | | |||||| ||| ||||| || | |||||| | ||||| || || | || || Sbjct 1145 GGAAAGGCCGCCGGTGGCAGAAATCGAGGCCGCATTTCAGTTTTACGATGATCGGCTGTG 1086 Query 31082 GGTGTTTGGCCTGACTGGAACGGCGAAAGCCGACAGGCTGATCGAAATATTCGACTACGC 31141 ||| ||||||||||| |||||||| ||||||| || |||| || || ||| ||| || Sbjct 1085 GGTTTTTGGCCTGACGGGAACGGCAAAAGCCGCGCGGGTGATTGAGATCTTCAGCTATGC 1026 Query 31142 TCGCCGCCGATACGGCATCCAGTTATTCATCATCGACAGCCTGATGAAATGCGGCATAGG 31201 | || || ||||| || ||| | || | ||||||||||||||||||||||| || || Sbjct 1025 GCAGCGTCGTTACGGTATTCAGCTGTTTGTTATCGACAGCCTGATGAAATGCGGTATCGG 966 Query 31202 TGACGATGACTATAACGGGCAGAAAGCATTTGTTGACTCGATTTGTGACTTCAAAAACAA 31261 || ||||| || |||||||||||||| ||||| || | | ||||||||||||||| Sbjct 965 GGAGGATGATTACAACGGGCAGAAAGCCTTTGTGGATGCCCTGTGTGACTTCAAAAACCG 906 Query 31262 AACAAACTCCCACGTCATTCTCGTTACTCACTCCAGAAAAGGAGATAGCGAAGAAAAACC 31321 || | ||| || || || || || ||| ||||||| || || || || ||| Sbjct 905 TACCCGCAGCCATGTGATCCTGGTGACCCACAGTCGAAAAGGGGACAGTGAGGAGCGACC 846 Query 31322 AACCGGGAAAATGGACGTAAAAGGCTCTGGAGCGATAACAGACCTGACAGACAACCTTTT 31381 || ||||||||||| || |||||| | || ||||| || |||||||| ||||| | | Sbjct 845 GACGGGGAAAATGGATGTCAAAGGCACCGGGGCGATTACTGACCTGACCGACAATTTGAT 786 Query 31382 TATCATCTGGCGTAACAAGGCTCGCGAGAGAGCGTTACAGAGAGTTCAG---AGTGGTGA 31438 || |||||||| || || || || ||| | | ||| || | || ||| | || | Sbjct 785 GATTATCTGGCGCAATAAAGCCCGTGAGCGTGTGTTGCA-AAAG--CAGGACACCGGAGC 729 Query 31439 AAAGATGTCAGAGAAGGA---CGAACAGCTACTGGCATCTCCGGCATCTGTTTTGATGCT 31495 | | | || ||||| ||| | |||||| |||||| | | || || | Sbjct 728 CGGGTTAACGGAAAAGGAACGGGAAAA---ACTGGCCGATCCGGCGGCCATGGTGTTGAT 672 Query 31496 TGAAAAACAACGTAACGGCGAAGGTTGGGAAGGTGGTGTCCCGTTGTTCCTTGACGAGCA 31555 ||| ||||| || |||||| | || ||||| || ||| || | ||| || ||| | | Sbjct 671 TGAGAAACAGCGGAACGGCAACGGCTGGGAGGGCGGTATCGGGCTGTATCTGGACAAAAA 612 Query 31556 ATCGCACCAGTTCCTGCAACTTGAATCAGGAT-CGCCTTATAGCTACATCGCCAATATGC 31614 ||| || ||||| ||| | ||| | || | || ||| ||| || |||||||||| Sbjct 611 ATCCCATCAGTTTTTGCCGCAGGAA-CGGGCTGATCCCTATCACTATATTGCCAATATGC 553 Query 31615 CGAAATCGGAATATGACGAGGCGTGG 31640 || || || |||||||| | |||| Sbjct 552 CGGCCTCTGAGTATGACGAAGTGTGG 527 >seq2629 Length=15125 Score = 140 bits (154), Expect = 8e-29 Identities = 122/152 (80%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 33649 GATAAACTTAAGATTCGAAAACTCGCCTTAAAGCCCCGCAGTTACTGGATTAAACAAGCC 33708 |||||||| || || || | || |||| ||||||||||| |||||||||||||| Sbjct 152 GATAAACTCAAAGCCCGCAAGTTAGCAGTAAAACCCCGCAGTTATTGGATTAAACAAGCA 93 Query 33709 CAACAAGCCGTAAACGCCTTCATCAGAGAAAGAGACCGCGACTTACCATGTATCTCGTGC 33768 ||||||||||| ||||| | ||||||||||||||||| || || ||||| || || ||| Sbjct 92 CAACAAGCCGTCAACGCATATATCAGAGAAAGAGACCGTGATTTGCCATGCATATCATGC 33 Query 33769 GGAACGCTCACGTCTGCTCAGTGGGATGCCGG 33800 |||||| | ||||||||||||||||| || Sbjct 32 GGAACGTTTCAATCTGCTCAGTGGGATGCTGG 1 Score = 98.7 bits (108), Expect = 2e-16 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 24921 CGATCACGCACTGTCTTGCGGTTGGCATCAATTAGCTTTGGAATTTCCTTCAGTTCAGCA 24980 || || ||||| || || ||||| || ||||||||||| ||||| || | || || Sbjct 9541 CGCTCTCGCACAGTTCGTCGATTGGCGTCGATTAGCTTTGGTATTTCTTTTAACTCTGCT 9482 Query 24981 ACAAGGTCTTTGCCAAGACCATCGAGATATGTTTTCGTCTGCGCAACTTTATACGCCAGA 25040 || | |||||| || || ||||| || || ||||| | || || ||||| || |||| Sbjct 9481 ACTAAGTCTTTACCGAGCCCATCAAGGTAAGTTTTTGATTGAGCGACTTTGTAGGCCAAT 9422 Query 25041 GAAGCGATCTCCTTTCTGCCCTTTGCCGTTGTGATATCAGGCACAAAGGACATAACTTC 25099 ||||| || ||||| | || || | || |||| |||||| | ||| || ||||||| Sbjct 9421 GAAGCAATTTCCTTGCGACCTTTAACAGTGGTGACATCAGGAATAAAAGAATTAACTTC 9363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123848587766272