Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq2252 107 2e-18 seq2162 100 2e-16 >seq2252 Length=1130325 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | || | |||| ||| | |||||| ||||| || || ||||||||| | Sbjct 562703 CCACCGCGAAGGCGGAGAACCAGATGGAGCGTAGATTCTTTCTGGATGTTGTAGTCGGAC 562762 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | | || |||||||| || |||||| | || | ||||| ||||| || || Sbjct 562763 AGGGTCCTTCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGATCTGGGGGG 562822 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||||||||| ||||| || | | |||| | ||||| | | |||||| Sbjct 562823 ATTCCCTCTTTATCTTGAATCTTTGCCTTGACGTTTTCAATGGTGTCCGAACCCTCAACT 562882 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || | || || |||| ||| ||||| || |||||||| Sbjct 562883 TCAAGAGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAAATTTGCAT 562929 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||||| | | |||| | || |||||||| || ||| Sbjct 563770 GTCGATTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGACCATCCTCGAGCTGCTTTCCG 563829 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || || ||||| ||||| || || | ||||| || || |||||| || Sbjct 563830 GCGAAGATCAGGCGCTGCTGATCGGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTG 563889 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | |||| | |||||| | |||||| || || || || || | || ||||| || || Sbjct 563890 ACGTTTTCGATAGTGTCAGAGGCTTCGACCTCGAGGGTGATGGTCTTTCCCGTGAGGGTC 563949 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||||||||| Sbjct 563950 TTGACGAAGATTTGCAT 563966 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | || | |||| ||| | |||||| || || || || ||||||||| | Sbjct 563512 CCACCGCGAAGGCGGAGAACCAGATGGAGCGTAGATTCCTTCTGGATGTTGTAGTCGGAC 563571 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | || |||||||| || |||||| | || || ||||| || || || || Sbjct 563572 AAAGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGA 563631 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || |||||| || | | | || | ||||| | |||||| || Sbjct 563632 ATTCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCGACC 563691 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 || || || || | || || |||| ||| ||||| |||||||||||| || Sbjct 563692 TCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATTTGCATACCT 563742 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| || | | |||| | ||||| | ||| || ||| Sbjct 562961 GTGGATTCCTTCTGGATGTTGTAGTCACTGAGGGTGCGGCCATCTTCCAACTGCTTTCCG 563020 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || | ||||| || || || || | ||||| || || |||||| || Sbjct 563021 GCGAAGATCAAGCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCTTGGATCTTAGCCTTG 563080 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | |||||| || || || || |||| || ||||| || || Sbjct 563081 ACGTTCTCGATGGTGTCAGAGGCTTCGACCTCGAGGGTGATAGTCTTTCCCGTGAGGGTC 563140 Query 27231 TTCACAAAGATTTGCATA 27248 || ||||||||||||||| Sbjct 563141 TTGACAAAGATTTGCATA 563158 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| || |||| | ||||| | ||| || ||| Sbjct 563189 GTCGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCTTCCAACTGCTTTCCG 563248 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || | ||||| || || || || | || |||||||| ||||||| ||| Sbjct 563249 GCGAAGATCAAGCGCTGCTGGTCTGGGGGAATTCCTTCTTTATCTTGGATCTTGGCCTTC 563308 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | |||| | ||| || | | || || || || || || | || || |||| ||| Sbjct 563309 ACGTTTTCGATAGTATCAGATCCCTCGACCTCCAGGGTGATGGTCTTTCCGGTCAAAGTC 563368 Query 27231 TTCACAAAGATTTGCATAGCT 27251 ||||| |||||||||||| || Sbjct 563369 TTCACGAAGATTTGCATACCT 563389 >seq2162 Length=74254 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27050 CGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 ||| || || || || || ||||||||||||| |||| | ||||||||||| || || Sbjct 48612 CGTCGATTCCTTCTGGATGTTGTAGTCGCTCAAAGTGCGGCCATCTTCGAGCTGCTTTCC 48553 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| | ||||| | ||| || || || || | ||||| || || |||||| || Sbjct 48552 AGCGAAGATGAGTCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTT 48493 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 || | | || | | ||||| | ||||| || || || || | |||||||| || || Sbjct 48492 CACGTTCTCAATGGAGTCTGAACCCTCAACCTCAAGGGTGATCGTCTTGCCCGTAAGCGT 48433 Query 27230 TTTCACAAAGATTTGCAT 27247 ||||| ||||||||||| Sbjct 48432 CTTCACGAAGATTTGCAT 48415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424919567664768