Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_027984.1 Length=57677 Score E Sequences producing significant alignments: (Bits) Value seq2664 286 1e-72 seq2629 149 2e-31 >seq2664 Length=5510 Score = 286 bits (316), Expect = 1e-72 Identities = 476/681 (70%), Gaps = 14/681 (2%) Strand=Plus/Minus Query 15641 TTGAGCTGAAGCCTGGTATTCTCCTTAAGCGCCTTACCCGTCAGGCGACGTGCTGCAAGA 15700 ||||||||||||| || | || ||||| || |||| |||||| | |||| | | Sbjct 1200 TTGAGCTGAAGCCGGGACAGTTACTGAAGCGGCTGACCCAGCAGGCGGCTTGCTCGGAAA 1141 Query 15701 TGCCGCCAGTGCTGGAAATTGACTCTGCATTTAAATTTTATGACGAAAGACTTTGGGTGT 15760 |||||| ||| ||||| || | |||||| | ||||| || || | || ||||| | Sbjct 1140 GGCCGCCGGTGGCAGAAATCGAGGCCGCATTTCAGTTTTACGATGATCGGCTGTGGGTTT 1081 Query 15761 TTGGCCTGACCGGAACGGCGAAAGCCGACAGGCTGATCGAAATATTCGACTACGCTCGCC 15820 |||||||||| |||||||| ||||||| || |||| || || ||| ||| || | | Sbjct 1080 TTGGCCTGACGGGAACGGCAAAAGCCGCGCGGGTGATTGAGATCTTCAGCTATGCGCAGC 1021 Query 15821 GCCGATACGGTATCCAGTTATTCATCATCGACAGCCTGATGAAATGTGGCATAGGCGACG 15880 | || |||||||| ||| | || | |||||||||||||||||||| || || || || | Sbjct 1020 GTCGTTACGGTATTCAGCTGTTTGTTATCGACAGCCTGATGAAATGCGGTATCGGGGAGG 961 Query 15881 ATGACTATAACGGGCAGAAGGCGTTTGTTGACTCGATTTGCGACTTCAAAAACAAAACAA 15940 |||| || ||||||||||| || ||||| || | | || |||||||||||| || Sbjct 960 ATGATTACAACGGGCAGAAAGCCTTTGTGGATGCCCTGTGTGACTTCAAAAACCGTACCC 901 Query 15941 ACTCCCACGTCATTCTCGTTACTCACTCGCGAAAAGGAGACAGCGAAGAAAAACCAACCG 16000 | ||| || || || || || ||| |||||||| ||||| || || ||| || | Sbjct 900 GCAGCCATGTGATCCTGGTGACCCACAGTCGAAAAGGGGACAGTGAGGAGCGACCGACGG 841 Query 16001 GGAAAATGGACGTAAAAGGCTCTGGAGCGATAACAGACCTGACAGACAACCTTTTCATCA 16060 |||||||||| || |||||| | || ||||| || |||||||| ||||| | | || | Sbjct 840 GGAAAATGGATGTCAAAGGCACCGGGGCGATTACTGACCTGACCGACAATTTGATGATTA 781 Query 16061 TCTGGCGTAACAAGGCTCGCGAGAGAGCGTTACAGAGAGTTCAG---AGTGGTGAAAAGA 16117 ||||||| || || || || ||| | | ||| || | || ||| | || | | Sbjct 780 TCTGGCGCAATAAAGCCCGTGAGCGTGTGTTGCA-AAAG--CAGGACACCGGAGCCGGGT 724 Query 16118 TGTCAGAGAAGGA---CGAACAGCTACTGGCATCTCCGGCATCTGTTTTGATGCTTGAAA 16174 | | || ||||| ||| | |||||| |||||| | | || || |||| | Sbjct 723 TAACGGAAAAGGAACGGGAAAA---ACTGGCCGATCCGGCGGCCATGGTGTTGATTGAGA 667 Query 16175 AACAACGTAACGGCGAAGGTTGGGAAGGTGGTGTCCCGTTGTTCCTTGACGAGCAATCGC 16234 |||| || |||||| | || ||||| || ||| || | ||| || ||| | |||| | Sbjct 666 AACAGCGGAACGGCAACGGCTGGGAGGGCGGTATCGGGCTGTATCTGGACAAAAAATCCC 607 Query 16235 ACCAGTTCCTGCAACTTGAATCAGGAT-CGCCATATAGCTACATCGCCAATATGCCGAAA 16293 | ||||| ||| | ||| | || | || ||| ||| || |||||||||||| Sbjct 606 ATCAGTTTTTGCCGCAGGAA-CGGGCTGATCCCTATCACTATATTGCCAATATGCCGGCC 548 Query 16294 TCGGAATATGACGAGGCGTGG 16314 || || |||||||| | |||| Sbjct 547 TCTGAGTATGACGAAGTGTGG 527 Score = 253 bits (280), Expect = 8e-63 Identities = 713/1075 (66%), Gaps = 36/1075 (3%) Strand=Plus/Minus Query 13493 ACCTGTTGCCAAACGGCAAGAAAGAGGGGCATGAGTGGGTTGCCGGTAACGTCAACGGTG 13552 ||||| |||| |||| || | |||||||||||||||| ||| |||||||| | Sbjct 2328 ACCTGCTGCCGGACGGACGCAAGGCCGGGCATGAGTGGGTTGTCGGATCGGTCAACGGGG 2269 Query 13553 ACAAGGGAAACAGCCTTAAGGTCAACATTAGCGGCAAGAAAAAATGGGCTGATTTCGCTG 13612 | || |||||||| || | || | |||||||||| ||| | || || |||| Sbjct 2268 AAGCCGGCAACAGCCTGAAAATTAATTTGTCCGGCAAGAAAGTCTGGTCCGACTTTGCTG 2209 Query 13613 AGGGAGACGGCGGTGACATGCTTGATTTGTGGATGGCATGT-CGTGGAATTAACCTGCAT 13671 | || |||||| || || | ||||||||| || || || |||| | |||||| Sbjct 2208 AAGGCACCGGCGGGGATCTGTTGGATTTGTGGGTG-CAGGTGCGTGATTGTGGGCTGCAT 2150 Query 13672 CAGGCTATGCAGGAAGCGAAAGCATTTCTCGGTATCAAGGATGACGATCACCATTTCGAT 13731 ||||| ||| ||| || ||| ||||| || || |||||||||| |||||| | Sbjct 2149 CAGGCCATGACGGAGGCAAAACAGTTTCTGGGGATTGCCGATGACGATCGCCATTTTGCC 2090 Query 13732 GCCAAACGTGAGAAAAAA--TTCTCCAGACCTGACCGCAAGAAAATCGCCCGCTACGTTA 13789 ||||||| || |||||| || ||| | || || || | | | || |||| Sbjct 2089 GCCAAACA-GACAAAAAACTTTGTCCGG-CCAGATCGTCATAGGCTGGCAAAACACGTCT 2032 Query 13790 CCAGAACAGAATCCCATCTTGAG--TACCTG-CAATCGCGTGGCATA--TCGCCAGAAAT 13844 || | | || || | || | || ||| | | | || || || |||||||| Sbjct 2031 TCAAACCTGA--CCAGTGTTATGCCTATCTGGCTAGC-CGGGGGATCAGTCGCCAGACCG 1975 Query 13845 CGTAAAGCGCTACGAGGTTGTCAGCGGCAAGGTGTGGAATG-----GAGAGC-GGGAACT 13898 || || ||| | ||| ||| | || || ||| | || | | ||| | | Sbjct 1974 CGGAA-GCGTTT-GAGATTGGGGATGCCAGTGTCTGGTTTCCTGCTGAAAACAGGGTATT 1917 Query 13899 GGATGCTCTGGTGCTTCCGTACAAACGCGATGGTGAGTTGTTGCAGGTCAAGCGAATCAG 13958 | || | | | || |||||||| | || || |||||||||||||||| ||||| Sbjct 1916 GCCGGCCATTGCCTTCCCCTACAAACGGAACGGGGAACTGTTGCAGGTCAAGCGCATCAG 1857 Query 13959 CACTGAGCGCCCGGACGGGAAGAAAGTCATTATGGCAGAAGGTGATTGCGAACCTTGTCT 14018 || | ||| || | || || ||||| || ||||| |||| || ||||| || || Sbjct 1856 TACGGTGCGTCCCAAGGGTAAAAAAGTGATGATGGCGGAAGCCCGGTGTGAACCCTGCCT 1797 Query 14019 GTTCGGATGGCAGGCTCT---GGACGCTGGCGTGAGGGCGGTTGTACTTTGCGAAGGCGA 14075 ||| || |||||||| | | |||||| | | | ||| | | || ||||| || Sbjct 1796 GTTTGGCTGGCAGGCAATACCGAACGCTGTCC---GAGTGGTGATTTTGTGTGAAGGGGA 1740 Query 14076 AATTGATTGTATGAGCTATGCGCAATACGGCATCTCGGCGTTATCCGTGCCGTTTGGTGG 14135 || || || |||| ||| || ||||| | |||| | || |||||||| || || Sbjct 1739 GATCGACTGCCTGAGTTATCACCAGTACGGTTTGCCGGCCCTGTCTGTGCCGTTCGGGGG 1680 Query 14136 CGGGAAAGGCGCTAAGCAGCAGTGGATTGAGTTTGAGTATCACAACCTCGACAGGTTTGA 14195 || || || || || |||||||||||||||||||| || ||||| || || | ||||| Sbjct 1679 TGGTAAGGGGGCCAAACAGCAGTGGATTGAGTTTGAATACCACAATCTGGATCGCTTTGA 1620 Query 14196 GGAAATATTCATCTCGATGGACGTTGATGATGTTGGTCGTGAAGCCGCAAGGGAAATCGC 14255 |||||| | || || ||||| ||||| || || || || || || | || || || Sbjct 1619 GGAAATTTGGATTTCCATGGATAACGATGACGTGGGGCGGGAGGCGGCCAAAGAGATTGC 1560 Query 14256 AAGCCGACTCGGTGAACATCGTTGCCGTCTTGTTACTCTGCCGTACAAAGACATCAACGA 14315 ||||| | || | |||||| ||||| | || | ||||||||||| || ||||| | Sbjct 1559 CAGCCGGTTAGGGGCACATCGCTGCCGGTTAGTCAGCCTGCCGTACAAGGATATCAATGC 1500 Query 14316 ATGCCTGATGAACGGTGTTACCGAGGATGAAATCTGGCAGTACATCGGCACGGCATCCTA 14375 | || | || | || |||||| | || | | | | |||||| ||| Sbjct 1499 CGGTTTGCAGGCGGGCATGACACCGGATGAGGTGGTGCGTTGCCTTGAAACGGCAGCCTT 1440 Query 14376 TTTCGATCCTGAAGAACTCTACAGTGCGCGAGAGTTTTACCAGGACACTATCAACGCTTT 14435 ||| || || ||||| | | |||||| || |||||||| |||||||| || | || || Sbjct 1439 TTTTGACCCGGAAGAGTTGTGCAGTGCCCGCGAGTTTTATCAGGACACGATTGAGGCGTT 1380 Query 14436 CTACGGCAAGAAGCAGTATCTGTTTAATCCACCGTGGGAATCTCTGGCAGA---TAAATT 14492 |||||| || || | ||||||| |||||||||| | ||| || ||| Sbjct 1379 CTACGGTCAGGCCCACTGCCTGTTTACCACACCGTGGGA----CAGGCTGAATCCGCATT 1324 Query 14493 CCAG-TTCCGTGAGGCCGAGTTGACGCTGGTCAATGGTGTGAACGGTCACGGAAA 14546 ||| ||||| || | ||| ||||| || ||||||| || ||||| |||||||| Sbjct 1323 TCAGTTTCCGCGAATCAGAGCTGACGGTGCTCAATGGGGTCAACGGGCACGGAAA 1269 Score = 105 bits (116), Expect = 2e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 12548 ATGAGCATGAATCTTATGGCTAAGGCCATGAATATAAAGGTTGGCAACCCACTGAGAAAA 12607 ||||| |||| ||| ||||| ||||| ||| ||| | ||| ||||| | ||||||||| Sbjct 3175 ATGAGTATGAGTCTGATGGCGAAGGCAATGGGTATCAGGGTAGGCAATTCCCTGAGAAAA 3116 Query 12608 CTGGTTCTGATTAAACTTGCCGATAACGCCAATGATAATGGCGAATGCTGGCCTTCATAT 12667 ||||| ||||| ||| | || ||||| || || || || || || |||||||||||||| Sbjct 3115 CTGGTGCTGATCAAATTAGCGGATAATGCGAACGACAAAGGGGAGTGCTGGCCTTCATAC 3056 Query 12668 CAACATGTCGCTGACCAGTGTGA 12690 | || | ||||| || || || Sbjct 3055 CGGCACATTGCTGATCATTGCGA 3033 >seq2629 Length=15125 Score = 149 bits (164), Expect = 2e-31 Identities = 243/354 (69%), Gaps = 6/354 (2%) Strand=Plus/Minus Query 20002 GGAGGCTGCTTAAT--GGCTAAACCAGCGCGAAGGAAATGCAAAATCTGTAAGGAATGGT 20059 |||||||| | ||| |||||| ||| |||| || |||||||| |||| || |||| Sbjct 352 GGAGGCTGTTAAATATGGCTAACCCAAGGCGACGGCGCTGCAAAATATGTAGAGAGTGGT 293 Query 20060 TTCACCCGGCATTCTCAAATCAGTGGTGGTGCTGCCCGGAACACGGAACTCAATTAGCAC 20119 |||| || | | |||| |||||| |||| || |||||| | |||||||| Sbjct 292 TTCATCCCAAGTACGAAAATATAGAGTGGTGTAGCCCAGAGCACGGAGCAGAATTAGCAA 233 Query 20120 TCGAACGACGAAGTAAAGAACGCGAAAAAGCGGAAAAAGCANNNNNNNNNNNNNNNNNNN 20179 || | ||||||||||| || | |||||| ||| || Sbjct 232 TCAAGCGACGAAGTAAGGAGAGAGAAAAACTAGAAGC--CAAACTCAAGAAAGAACAGAA 175 Query 20180 NNGAGGAGCAGAAACAGAAAG--ATAAACTGAAGATTCGAAAACTCGCCTTAAAGCCCCG 20237 | || || || || | ||||||| || || || | || |||| ||||| Sbjct 174 GCAAAAAGAAGTAAAAGCCCGCGATAAACTCAAAGCCCGCAAGTTAGCAGTAAAACCCCG 115 Query 20238 CAGTTACTGGATTAAACAAGCCCAACAAGCCGTAAACGCCTTCATCAGAGAAAGAGACCG 20297 |||||| |||||||||||||| ||||||||||| ||||| | ||||||||||||||||| Sbjct 114 CAGTTATTGGATTAAACAAGCACAACAAGCCGTCAACGCATATATCAGAGAAAGAGACCG 55 Query 20298 CGACTTACCATGTATCTCGTGCGGAACGCTCACGTCTGCTCAGTGGGATGCCGG 20351 || || ||||| || || ||||||||| | ||||||||||||||||| || Sbjct 54 TGATTTGCCATGCATATCATGCGGAACGTTTCAATCTGCTCAGTGGGATGCTGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184438527032352