Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_027991.1 Length=147303 Score E Sequences producing significant alignments: (Bits) Value seq272 178 1e-39 seq1090 120 3e-22 seq2442 87.8 2e-12 >seq272 Length=22787 Score = 178 bits (196), Expect = 1e-39 Identities = 190/251 (76%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 58079 ACGCTACAGCTGATTAAAGAACACGGCTGTAAAGCGGGGCTGGTATTCAACCCGGCAACG 58138 || ||||||||||||||||| |||||||||||||| || | || || || |||||||| Sbjct 9059 ACCCTACAGCTGATTAAAGATCACGGCTGTAAAGCCGGTTTAGTCTTTAATCCGGCAACA 9000 Query 58139 CCGCTCAGTTATCTCGATTACGTCATGGACAAACTGGATGTGATCCTGCTGATGTCCGTG 58198 || ||||| ||||| ||||| || |||| ||||| || || || || ||||||| ||| Sbjct 8999 CCTCTCAGCTATCTTGATTATGTGCTGGATAAACTCGACGTTATTTTGTTGATGTCAGTG 8940 Query 58199 AACCCAGGCTTCGGCGGCCAGTCTTTTATTCCGCAGACGCTGGATAAACTGCGCGAAGTG 58258 ||||| || ||||||||||||||||| |||||| | || ||| ||||| ||||| | || Sbjct 8939 AACCCTGGGTTCGGCGGCCAGTCTTTCATTCCGGAAACCCTGCATAAATTGCGCCACGTC 8880 Query 58259 CGTCGCCGCATTGATGCGTCCGGTTACGACATTCGCCTGGAAGTGGACGGCGGCGTGAAG 58318 ||| |||||||| ||| || || || || || ||| | || || || | || Sbjct 8879 CGTAAAATCATTGATGAAAGCGGCTATGATATCCGTCTCGAAATTGATGGTGGTATCAAA 8820 Query 58319 GTGAACAATAT 58329 | ||||| || Sbjct 8819 GCCAACAACAT 8809 >seq1090 Length=75268 Score = 120 bits (132), Expect = 3e-22 Identities = 171/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 58103 GGCTGTAAAGCGGGGCTGGTATTCAACCCGGCAACGCCGCTCAGTTATCTCGATTACGTC 58162 || |||||||| || | || | || || ||||| || | | |||||||| || || Sbjct 64881 GGTTGTAAAGCAGGCTTAGTGCTTAATCCAGCAACCCCATTAAACTATCTCGACTATGTT 64940 Query 58163 ATGGACAAACTGGATGTGATCCTGCTGATGTCCGTGAACCCAGGCTTCGGCGGCCAGTCT 58222 ||||| ||| ||||| | || ||||||||||| || ||||||||||| || || || || Sbjct 64941 ATGGATAAATTGGATCTTATTCTGCTGATGTCTGTTAACCCAGGCTTTGGTGGGCAATCA 65000 Query 58223 TTTATTCCGCAGACGCTGGATAAACTGCGCGAAGTGCGTCGCCGCATTGATGCGTCCGGT 58282 |||||||| | || || |||||| | || |||| ||| ||||||| ||| Sbjct 65001 TTTATTCCTAATACCCTCGATAAATTACGACAAGTTCGTAAGATGATTGATGATGGTGGT 65060 Query 58283 TACGACATTCGCCTGGAAGTGGACGGCGGCGTGAAGGTGAACAATATCGGCGAGATCGCG 58342 || |||||||| | ||| | || ||||| || || || | ||||| | || || ||| Sbjct 65061 TATGACATTCGTTTAGAAATTGATGGCGGTGTCAAAGTCGATAATATTGCTGAAATAGCG 65120 Query 58343 C 58343 | Sbjct 65121 C 65121 >seq2442 Length=9075 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 59614 AATGCACCCTTAGTTCAATTGGATAGAGCAACGGTCTTCTAAATCGTTAGTTACAGGTTC 59673 ||||| ||||||| ||| ||||||||||||||| ||||||| ||| || |||||||| Sbjct 9003 AATGCGCCCTTAGCTCAGCTGGATAGAGCAACGGCCTTCTAAGCCGTAGGTCACAGGTTC 9062 Query 59674 GAATCCTGTAGGG 59686 ||||||||||||| Sbjct 9063 GAATCCTGTAGGG 9075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471224729550720