Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_027993.1 Length=43587 Score E Sequences producing significant alignments: (Bits) Value seq348 93.3 1e-14 >seq348 Length=55286 Score = 93.3 bits (102), Expect = 1e-14 Identities = 83/102 (81%), Gaps = 4/102 (4%) Strand=Plus/Minus Query 26622 TTCGGCGGCTACTTGCGGGACGATGGCATTGCCGTAACCGCGCAATCGTCCCACTCTTGC 26681 |||||| || |||| ||||||||||||||||||||| |||||| |||||||||| || Sbjct 41813 TTCGGCCGCGACTTCCGGGACGATGGCATTGCCGTAGGCGCGCAGGCGTCCCACTCGGGC 41754 Query 26682 GGGTATCCCATTAGCCAGCGG--GAATGCGCCGGGTTCAACC 26721 || | ||||| ||||||| | |||| || |||||||||| Sbjct 41753 AGGAACCCCATGAGCCAGCAGACGAAT--GCTGGGTTCAACC 41714 Score = 87.8 bits (96), Expect = 5e-13 Identities = 267/405 (66%), Gaps = 6/405 (1%) Strand=Plus/Minus Query 26916 GTGCGCGCCAAAGAAGAGTCGTTCTCTTTTGTGCGGTGCGCCGACGCTACAAGCTGGGAG 26975 ||| || |||| |||| || || ||| ||| || ||| ||||| |||||| |||| Sbjct 41327 GTGGGCCACAAACCAGAGCCGATCCCTTCGGTGGGGCGCGTCGACGGCACAAGCCGGGAC 41268 Query 26976 TACAGCAAACCCGACGGCGTAGTCTTCTCCTTCCAGGTGAGCTTGTAAATCGCACATCCA 27035 || || || | ||||||||| ||||||||||| ||| | || | ||| Sbjct 41267 AACGGCCGCCCGGCAGGCGTAGTCGATTCCTTCCAGGTCAGCAGACACTCCGTCGAGCCA 41208 Query 27036 CGATTTTG-CAATTGCTGCCGCAACCTGCTCCCCAAAGATGACTGGAGGGCGGCACTCGC 27094 | | ||| ||| || ||||||||||| || || | || ||| | || || | | | Sbjct 41207 -GTTCTTGCCAACCGCCGCCGCAACCTGTTCTCCCATGACGACAGCGGGCCGTCGGGCAC 41149 Query 27095 TGATGAGGTCGAGGAAGACCGGCGCGAGGTGTCTCGGGTCGAACTGTCCGAGTTGCTTTC 27154 ||||||| |||||| ||| ||||| | ||| ||| | | ||| | Sbjct 41148 GGATGAGGCGAAGGAAGTGGGGCCACAGGTGCCGATCGTCATCCTGGGCTTTTCCCTTAC 41089 Query 27155 CCGCCGCGCTAAACGGTTGGCAAGGCGGGCTTCCCGTCCAGAG-AGGCGCATCTTCCGGA 27213 |||| | ||||| ||||| || | ||| |||||||| || ||| || || || Sbjct 41088 CCGCGACTGAGAACGGCTGGCACGGGGCGCTGCCCGTCCACAGCTCGCG-GTCGTCGGGC 41030 Query 27214 ACTCCCGCAAGTCTGAGC-GCGAGAGGCCAGCCGCCGATACCCGCGAAAAAATGACACTG 27272 || ||||||| |||| || || | ||||||| |||| || ||||| || || || || Sbjct 41029 CAGCCAGCAAGTC-GAGCTGCAAGGGACCAGCCGGCGATGCCGGCGAAGAAGTGGCATTG 40971 Query 27273 GGTGAACCCGTCAAGGTCTTCTGGCTTAACTTCGGTAATGCTTCT 27317 | | ||| | |||||| || | ||| ||||| ||||| || Sbjct 40970 CCGGTATCCGGCGAGGTCTGAGGGTTGAACATCGGTGATGCTCCT 40926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139352060475232