Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_027994.1 Length=41632 Score E Sequences producing significant alignments: (Bits) Value seq348 98.7 3e-16 >seq348 Length=55286 Score = 98.7 bits (108), Expect = 3e-16 Identities = 84/102 (82%), Gaps = 4/102 (4%) Strand=Plus/Minus Query 25008 TTCGGCGGCTACTTGCGGGACGATGGCATTGCCGTAACCGCGCAATCGTCCCACTCTGGC 25067 |||||| || |||| ||||||||||||||||||||| |||||| |||||||||| ||| Sbjct 41813 TTCGGCCGCGACTTCCGGGACGATGGCATTGCCGTAGGCGCGCAGGCGTCCCACTCGGGC 41754 Query 25068 GGGTATCCCATTAGCCAGCGG--GAATGCGCCGGGTTCAACC 25107 || | ||||| ||||||| | |||| || |||||||||| Sbjct 41753 AGGAACCCCATGAGCCAGCAGACGAAT--GCTGGGTTCAACC 41714 Score = 87.8 bits (96), Expect = 5e-13 Identities = 267/405 (66%), Gaps = 6/405 (1%) Strand=Plus/Minus Query 25302 GTGCGCGCCAAAGAAGAGTCGTTCTCTTTTGTGCGGTGCGCCGACGCTACAAGCTGGGAG 25361 ||| || |||| |||| || || ||| ||| || ||| ||||| |||||| |||| Sbjct 41327 GTGGGCCACAAACCAGAGCCGATCCCTTCGGTGGGGCGCGTCGACGGCACAAGCCGGGAC 41268 Query 25362 TACAGCAAACCCGACGGCGTAGTCTTCTCCTTCCAGGTGAGCTTGTAAATCGCACATCCA 25421 || || || | ||||||||| ||||||||||| ||| | || | ||| Sbjct 41267 AACGGCCGCCCGGCAGGCGTAGTCGATTCCTTCCAGGTCAGCAGACACTCCGTCGAGCCA 41208 Query 25422 CGATTTTG-CAATTGCTGCCGCAACCTGCTCCCCAAAGATGACTGGAGGGCGGCACTCGC 25480 | | ||| ||| || ||||||||||| || || | || ||| | || || | | | Sbjct 41207 -GTTCTTGCCAACCGCCGCCGCAACCTGTTCTCCCATGACGACAGCGGGCCGTCGGGCAC 41149 Query 25481 TGATGAGGTCGAGGAAGACCGGCGCGAGGTGTCTCGGGTCGAACTGTCCGAGTTGCTTTC 25540 ||||||| |||||| ||| ||||| | ||| ||| | | ||| | Sbjct 41148 GGATGAGGCGAAGGAAGTGGGGCCACAGGTGCCGATCGTCATCCTGGGCTTTTCCCTTAC 41089 Query 25541 CCGCCGCGCTAAACGGTTGGCAAGGCGGGCTTCCCGTCCAGAG-AGGCGCATCTTCCGGA 25599 |||| | ||||| ||||| || | ||| |||||||| || ||| || || || Sbjct 41088 CCGCGACTGAGAACGGCTGGCACGGGGCGCTGCCCGTCCACAGCTCGCG-GTCGTCGGGC 41030 Query 25600 ACTCCCGCAAGTCTGAGC-GCGAGAGGCCAGCCGCCGATACCCGCGAAAAAATGACACTG 25658 || ||||||| |||| || || | ||||||| |||| || ||||| || || || || Sbjct 41029 CAGCCAGCAAGTC-GAGCTGCAAGGGACCAGCCGGCGATGCCGGCGAAGAAGTGGCATTG 40971 Query 25659 GGTGAACCCGTCAAGGTCTTCTGGCTTAACTTCGGTAATGCTTCT 25703 | | ||| | |||||| || | ||| ||||| ||||| || Sbjct 40970 CCGGTATCCGGCGAGGTCTGAGGGTTGAACATCGGTGATGCTCCT 40926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133096273241792