Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_027995.1 Length=41666 Score E Sequences producing significant alignments: (Bits) Value seq1458 131 4e-26 seq2629 122 2e-23 seq2599 84.2 6e-12 >seq1458 Length=11418 Score = 131 bits (144), Expect = 4e-26 Identities = 182/255 (71%), Gaps = 0/255 (0%) Strand=Plus/Plus Query 41205 GATCCAGAAATCCGTTACATGCCAAGCGGCGGCGCGGTTGCTAATCTAAGCATCGCCACA 41264 ||||| ||| | || || ||||| | || || || ||||| || | | | ||||| Sbjct 10906 GATCCGGAAGTTCGCTATATGCCGAATGGTGGAGCAGTTGCCAACATTACTCTGGCCACG 10965 Query 41265 ACTGAAAGCTGGAAGGATAAAACCACCGGCGAGAAGAAAGAACAAACGGAATGGCACCGC 41324 | || |||||| ||||| ||||| |||| || ||| |||| ||||||||||| Sbjct 10966 TCCGAGAGCTGGCGTGATAAGCAAACCGGTGAGATGAGAGAGAAAACCGAATGGCACCGA 11025 Query 41325 GTTGTCATCTTCGGTAAGCTGGCAGAAATTGCTAGCGAATACCTGCGCAAAGGTAGCAAG 41384 || ||||| |||||||| ||||||||| | ||| | || |||||||| ||||| || Sbjct 11026 GTGGTCATGTTCGGTAAACTGGCAGAAGTCGCTGGTGAGTACCTGCGTAAAGGCTCTCAG 11085 Query 41385 GTGTTCATTGAAGGCAGCCTGCGAACGCGTAAATGGCAGGACCAGGCTGGCGTTGATCGC 41444 || | || ||||| ||| || |||||||||||||| ||| ||| ||||| Sbjct 11086 GTCTATATCGAAGGTGCTTTGCAGACCCGTAAATGGCAGGATCAGAGTGGTCAGGATCGT 11145 Query 41445 TACACCACTGAAATC 41459 ||||| |||||| || Sbjct 11146 TACACGACTGAAGTC 11160 >seq2629 Length=15125 Score = 122 bits (134), Expect = 2e-23 Identities = 181/257 (70%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 41172 AACAAAGTAGAAATCATTGGCAACTTAGGCAACGATCCAGAAATCCGTTACATGCCAAGC 41231 ||||| ||| |||| || |||||||| | || || ||||| || ||||||||| Sbjct 12269 AACAAGGTAATCCTCATAGGTCACTTAGGCCAAGACCCTGAAATTCGATACATGCCAGCA 12328 Query 41232 GGCGGCGCGGTTGCTAATCTAAGCATCGCCACAACTGAAAGCTGGAAGGATAAAACCACC 41291 || || || || || ||||| | | |||||| | ||| ||| || ||| | Sbjct 12329 GGGGGAGCAGTAGCAAATCTCACACTAGCCACATCGGAATCGTGGCGTGACAAACAATCG 12388 Query 41292 GGCGAGAAGAAAGAACAAACGGAATGGCACCGCGTTGTCATCTTCGGTAAGCTGGCAGAA 41351 || || | | || |||| |||||||| || || || || ||||| ||| | || ||| Sbjct 12389 GGTGAAATGCGCGAGAAAACCGAATGGCATCGAGTGGTAATTTTCGGCAAGTTAGCTGAA 12448 Query 41352 ATTGCTAGCGAATACCTGCGCAAAGGTAGCAAGGTGTTCATTGAAGGCAGCCTGCGAACG 41411 |||| ||||||| ||| ||||| ||| |||| | ||| |||||| |||| |||| Sbjct 12449 GTTGCAGGCGAATATCTGAAAAAAGGAAGCCAGGTATACATCGAAGGCTCTCTGCAAACG 12508 Query 41412 CGTAAATGGCAGGACCA 41428 ||||||||||| ||||| Sbjct 12509 CGTAAATGGCAAGACCA 12525 >seq2599 Length=15424 Score = 84.2 bits (92), Expect = 6e-12 Identities = 162/237 (68%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 41194 ACTTAGGCAACGATCCAGAAATCCGTTACATGCCAAGCGGCGGCGCGGTTGCTAATCTAA 41253 ||||||| | || || ||| | |||||| || | || ||||| || | ||| | | Sbjct 318 ACTTAGGTCAAGACCCGGAAGTACGTTACTCACCCAATGGTGGCGCAGTCACCAATATCA 259 Query 41254 GCATCGCCACAACTGAAAGCTGGAAGGATAA--AACCACCGGCGAGAAGAAAGAACAAAC 41311 | || || ||||| ||||| || || || || || ||| || ||| |||| Sbjct 258 CACTGGCTACCTCTGAAGCATGGAAAGACAAGCAATCA--GGTGAGCTGAGGGAAAAAAC 201 Query 41312 GGAATGGCACCGCGTTGTCATCTTCGGTAAGCTGGCAGAAATTGCTAGCGAATACCTGCG 41371 ||||||||||| || || | ||||| || ||||||||| |||| | ||||| ||| | Sbjct 200 AGAATGGCACCGTGTGGTTCTGTTCGGAAAACTGGCAGAAGTTGCCGGTGAATATCTGAG 141 Query 41372 CAAAGGTAGCAAGGTGTTCATTGAAGGCAGCCTGCGAACGCGTAAATGGCAGGACCA 41428 ||||| ||| || | | ||||| || ||| ||| || || ||||| ||||| Sbjct 140 GAAAGGCAGCCAGATTTATATTGAGGGTCAATTGCAAACACGCAAGTGGCAAGACCA 84 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133205069541504